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Table 3 List of rice genes associated with crown root, lateral root, root hair formation after FA exposures

From: Autotoxicity mechanism of Oryza sativa: transcriptome response in rice roots exposed to ferulic acid

Gene name

RAB-DB Locus ID

TIGR Locus ID

Short exposures

Long exposures

Description

   

Fold change a

Fold change a

 

Crown root-related genes

OsCRL1

Os03g0149000

LOC_Os03g05500

−1.09

1.15

Protein of unknown function DUF260 domain containing protein.

OsCRL4

Os03g0666100

LOC_Os03g46330

−1.21

−1.04

SEC7-like domain containing protein.

OsCRL5

Os07g0124700

LOC_Os07g03250

1.64

1.06

ANT (Ovule development protein aintegumenta).

OsARL1

Os03g0149100

LOC_Os03g05510

   

WOX11

Os07g0684900

LOC_Os07g48560

1.86

−1.39

Homeobox domain containing protein.

Lateral root-related genes

ARF-16

Os06g0196700

LOC_Os06g09660

−1.73*

−1.43*

Auxin response factor 1.

AUX/IAA-1

Os01g0178500

LOC_Os01g08320

1.88*

−1.20

AUX/IAA protein family protein.

AUX/IAA-11

Os03g0633500

LOC_Os03g43400

1.07

−1.40

Auxin-responsive protein IAA17 (Indoleacetic acid-induced protein 17) (Auxin response 3).

AUX/IAA-13

Os03g0742900

LOC_Os03g53150

1.22

−1.04

AUX/IAA protein family protein.

AUX/IAA-23

Os06g0597000

LOC_Os06g39590

1.77*

−1.07

Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein).

AUX/IAA-29

Os12g0601400

LOC_Os12g40900

1.16*

−1.28

Auxin-responsive protein (Aux/IAA) (Fragment).

OsCel9C

Os05g0212300

LOC_Os05g12150

−1.59*

1.43*

Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).

Root hair-related genes

OsEXPA30

Os10g0535900

LOC_Os10g39110

   

OsRHL1

Os06g0184000

LOC_Os06g08500

   

OsCSLD1

Os10g0578200

LOC_Os10g42750

1.47

−1.94*

Cellulose synthase-9.

OsEXPA17

Os06g0108600

LOC_Os06g01920

   

OsEXPB5

Os04g0552200

LOC_Os04g46650

1.22

1.11

Beta-expansin 5.

OsAPY1

Os07g0682800

LOC_Os07g48430

1.35

−1.05

Apyrase.

  1. a The fold change in expression of each gene after FA treatment was calculated by the mean from 3 biological replicates and false discovery rate <0.1 is shown with a asterisk.