Table 1 Summary of S. dulcamara cDNA RNAseq data sets used for assembly
From: Genomic analysis of the native European Solanum species, S. dulcamara
Library | Sequencing method | # Reads (raw) | # Reads (high quality) | Avg read length (high quality) |
|---|---|---|---|---|
Mixed1 | GS-FLX titanium, single end, random primed, normalised | 799,937 | 786,113 | 297 |
Mixed1 | GS-FLX titanium, single end, 3’ primed, normalised | 568,762 | 558,729 | 312 |
Leaves1 | HiSeq2000, single end, random primed, 100bp, normalised | 127,318,285 | 107,557,660 | 96 |
Stem & primoridia1 | HiSeq2000, single end, random primed, 50bp | 516,292,741 | 471,046,908 | 50 |