Table 2 Selected genes related to seed embryo development in stratification seeds
Biological process | Gene bank description (gene name) | No. of unigene | Length (bp) | |
|---|---|---|---|---|
Phytohormone related | GA | Gibberellin 2-oxidase (GA2ox) | 3 | 124–357 |
Gibberellin 20 oxidase (GA20ox) | 3 | 147–339 | ||
GA oxidase (GAox) | 5 | 232–522 | ||
GAST-like gene product (GAST-Like) | 7 | 345–626 | ||
Gibberellin regulated protein; GRAS family transcription factor | 8 | 207–684 | ||
Kaurene oxidase (KO) | 2 | 130–213 | ||
ABA | ABA 8′-hydroxylase CYP707A1(CYP707A1) | 2 | 256,439 | |
9-cis-epoxycarotenoid dioxygenase (NCED) | 2 | 144,336 | ||
Abscisic stress ripening (ASR) | 5 | 176–772 | ||
ABA INSENSITIVE 2 (ABI2); Protein phosphatase 2C (PP2C) | 20 | 103–669 | ||
Auxin | Auxin-repressed protein (ARP) | 8 | 312–806 | |
SAUR family protein (SAUR); Auxin response factor (ARF);Auxin influx carrier component (AUX) | 18 | 119–727 | ||
IAA | IAA hydrolase (IAAH); IAA type protein; Indole-3-acetic acid-amido synthetase (IAAS) | 13 | 273–593 | |
BR | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (BRRK) | 3 | 121–309 | |
CPD brassinosteroid C-23 hydroxylase | Â | Â | ||
Ethylene | Ethylene-responsive protein (ERP) | 7 | 171–391 | |
|  | Ethylene insensitive (EIN3/EIL)-like transcription regulator 1-aminocyclopropane-1-carboxylic acid oxidase (ACC) | 3 | 258–387 | |
Seed maturation related | Late embryogenesis abundant protein (LEA) | 14 | 150–709 | |
Dehydrin (Dhn) | 13 | 174–836 | ||
Seed maturation protein (SMP) | 13 | 178–1304 | ||
Seed specific protein Bn15D1B (SCP) | 5 | 311–646 | ||
Lipid transfer protein precursor (LTP) | 6 | 372–727 | ||
Lipid binding protein (LBP) | 5 | 126–738 | ||
Somatic embryogenesis receptor-like kinase1 (SERK) | 6 | 166–474 | ||
Ripening regulated protein DDTFR19 (TPS) | 10 | 221–776 | ||
Trehalose-6-phosphate synthase (TrPS) | 7 | 248–494 | ||
Cell wall growth related | Xyloglucan endotransglucosylase/hydrolase (XET) | 19 | 96–756 | |
Cell wall invertase (CIN) | 4 | 144–654 | ||
Endo-beta mannanase (MAN) | 5 | 136–560 | ||
Beta 1,3 glucanase | 14 | 200–647 | ||
Pectin methylesterase (PME) | 18 | 109–603 | ||
Expansins (EXP) | 8 | 186–639 | ||
Polygalacturonase/inhibitor protein (PG/PGIP) | 36 | 184–826 | ||
Circadian rhythms | Early flowering protein (ELF) | 21 | 256–691 | |
Sensitive to freezing 6 (SFR^) | 20 | 235–542 | ||
Sucrose synthase (SUS) | 22 | 122–1313 | ||
Flavonol biosynthesis related | Chalcone-flavanone isomerase (CHI) | 11 | 98–468 | |
Chalcone synthase (CHS) | 17 | 159–831 | ||
Cytochrome P450 | Cytochrome P450 (CYP) | 60 | 93–525 | |
Obtusifoliol 14 alpha-demethylase (CYP51) | 4 | 152–555 | ||
Others | Cell elongation protein (CEP) | 4 | 306–721 | |
Dormancy-associated protein (DRM) | 3 | 439–653 | ||
Vaculoar H+-translocating inoraganic pyrophosphatase (VPP) | 10 | 107–848 | ||
Total number of unigenes | 464 | Â | ||