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Table 2 Major gene ontology biological process classifications represented by genes differentially expressed between control quarters from cows infected with E. coli (EC24T0) and S. aureus (SA24T0)

From: Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters

Clone accession No.

Gene symbol

Gene

Fold difference

CELLULAR COMPONENT ORGANIZATION AND BIOGENESIS

EC24T0 > SA24T0

  

AM017607

ARPC5L

actin related protein 2/3 complex, subunit 5-like

2.52

CN821828

AGT

angiotensinogen

3.73

AM034974

BZW2

basic leucine zipper and W2 domains 2

2.48

BG693016

BTG1

B-cell translocation gene 1, anti-proliferative

2.67

BF076579

BAX

BCL2-associated X protein

2.02

AJ818096

CEBPG

CCAAT/enhancer binding protein (C/EBP), gamma

2.19

CO888526

EMP1

epithelial membrane protein 1

2.30

CN824732

EIF1

eukaryotic translation initiation factor 1

2.08

CO894798

EIF1B

eukaryotic translation initiation factor 1B

2.03

CO888678

EIF3D

eukaryotic translation initiation factor 3, subunit D

2.03

AJ691100

EIF4A2

eukaryotic translation initiation factor 4A, isoform 2

2.52

CN823782

GABARAPL1

GABA(A) receptor-associated protein like 1

3.10

AJ818246

HSPD1

heat shock 60 kDa protein 1

2.34

AJ673268

HIST1H2AC

histone cluster 1, H2ac

3.30

CO884622

MID1IP1

MID1 interacting protein 1

2.18

AJ819252

MKI67IP

MKI67 (FHA domain) interacting nucleolar phosphoprotein

2.29

AJ673531

NDP

Norrie disease

3.44

AM037100

NUPR1

nuclear protein 1

2.27

CO888501

PDPK1

3-phosphoinositide dependent protein kinase-1

2.45

AM030492

PPP1R9B

protein phosphatase 1, regulatory (inhibitor) subunit 9B

2.63

CO890613

RAB43

RAB43, member RAS oncogene family

2.29

AJ813402

SETD7

SET domain containing (lysine methyltransferase) 7

2.40

AJ813146

SNRPG

small nuclear ribonucleoprotein polypeptide G

2.73

CO886482

SLC3A2

solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

2.54

CO892251

SLC7A8

solute carrier family 7 (cationic amino acid transporter, y + system), member 8

4.39

CO890843

STOM

stomatin

3.65

CO880484

SNTA1

syntrophin, alpha 1

4.49

CO887666

UTP14A

UTP14, U3 small nucleolar ribonucleoprotein, homolog A

2.26

SA24T0 > EC24T0

  

CO889600

AMOT

angiomotin

2.12

CO889378

CNN1

calponin 1, basic, smooth muscle

2.49

CN822971

CALR

calreticulin

2.36

BF604066

CD74

CD74 molecule, major histocompatibility complex, class II invariant chain

2.43

CO888048

CXCL12

chemokine (C-X-C motif) ligand 12

3.23

CO202183

FEZ1

fasciculation and elongation protein zeta 1

3.13

CO873026

FLNA

filamin A, alpha

2.31

AJ692384

GLMN

glomulin, FKBP associated protein

2.01

CN824202

GSK3B

glycogen synthase kinase 3 beta

2.02

CO887046

LRRC4C

leucine rich repeat containing 4C

2.92

CO872154

LASP1

LIM and SH3 protein 1

2.09

AM025652

MRPL32

mitochondrial ribosomal protein L32

2.06

CO893984

MYO9B

myosin IXB

4.03

CO889939

MYH11

myosin, heavy chain 11, smooth muscle

2.70

AM018723

PIGR

polymeric immunoglobulin receptor

2.03

AJ687977

SEC24D

SEC24 related gene family, member D

2.02

CO894656

SENP2

SUMO1/sentrin/SMT3 specific peptidase 2

3.32

CO876411

THY1

Thy-1 cell surface antigen

2.10

pTGFB1*

TGFB1

transforming growth factor beta 1

2.32

AJ814326

B4GALT1

UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase polypeptide 1

2.45

AM033343

VIM

vimentin

2.36

CO880794

WIPF1

WAS/WASL interacting protein family, member 1

2.34

RESPONSE TO STRESS

EC24T0 > SA24T0

  

AM006216

ATF4

activating transcription factor 4

2.07

CN821828

AGT

angiotensinogen

3.73

BF076579

BAX

BCL2-associated X protein

2.02

AJ818096

CEBPG

CCAAT/enhancer binding protein (C/EBP), gamma

2.19

BF606419

CXCL2

chemokine (C-X-C motif) ligand 2

2.03

CO889145

CSDA

cold shock domain protein A

3.16

CN824732

EIF1

eukaryotic translation initiation factor 1

2.08

CO892245

GADD45G

growth arrest and DNA-damage-inducible, gamma

2.91

AJ818246

HSPD1

heat shock 60 kDa protein 1

2.34

CN824191

HSP90AB1

heat shock protein 90 kDa alpha (cytosolic), class B member 1

2.25

AJ818172

HIF1A

hypoxia-inducible factor 1, alpha subunit

2.41

AM013900

LBP

lipopolysaccharide binding protein

2.79

CO888501

PDPK1

3-phosphoinositide dependent protein kinase-1

2.45

CN823413

SEPP1

selenoprotein P, plasma, 1

2.12

CO886480

STAT3

signal transducer and activator of transcription 3

2.25

AM025615

TRIB3

tribbles homolog 3

3.02

SA24T0 > EC24T0

  

CO888048

CXCL12

chemokine (C-X-C motif) ligand 12

3.23

CO883340

CFD

complement factor D

2.31

CN824202

GSK3B

glycogen synthase kinase 3 beta

2.02

AJ820250

IDH1

isocitrate dehydrogenase 1 (NADP+), soluble

3.36

CO886661

RECQL5

RecQ protein-like 5

2.60

CO887968

TYMS

thymidylate synthetase

3.35

AJ695939

TFPI2

tissue factor pathway inhibitor 2

2.03

pTGFB1*

TGFB1

transforming growth factor beta 1

2.32

AJ814326

B4GALT1

UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase polypeptide 1

2.45

DEATH

   

EC24T0 > SA24T0

  

CN821828

AGT

angiotensinogen

3.73

BG693016

BTG1

B-cell translocation gene 1, anti-proliferative

2.67

BF076579

BAX

BCL2-associated X protein

2.02

AJ818096

CEBPG

CCAAT/enhancer binding protein (C/EBP), gamma

2.19

CO888526

EMP1

epithelial membrane protein 1

2.30

CO892245

GADD45G

growth arrest and DNA-damage-inducible, gamma

2.91

AJ818246

HSPD1

heat shock 60 kDa protein 1

2.34

AM037100

NUPR1

nuclear protein 1

2.27

CO883017

PHLPP

PH domain and leucine rich repeat protein phosphatise

2.26

CO885391

TAX1BP1

Tax1 (human T-cell leukemia virus type I) binding protein 1

3.05

AM025615

TRIB3

tribbles homolog 3

3.02

SA24T0 > EC24T0

  

CN822971

CALR

calreticulin

2.36

BF604066

CD74

CD74 molecule, major histocompatibility complex, class II invariant chain

2.43

pCSF2*

CSF2

colony stimulating factor 2 (granulocyte-macrophage)

2.57

CN824202

GSK3B

glycogen synthase kinase 3 beta

2.02

pTGFB1*

TGFB1

transforming growth factor beta 1

2.32

AJ814326

B4GALT1

UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase polypeptide 1

2.45

CELL ACTIVATION

EC24T0 > SA24T0

  

CN821828

AGT

angiotensinogen

3.73

BF076579

BAX

BCL2-associated X protein

2.02

AJ818096

CEBPG

CCAAT/enhancer binding protein (C/EBP), gamma

2.19

SA24T0 > EC24T0

  

BF604066

CD74

CD74 molecule, major histocompatibility complex, class II invariant chain

2.43

pCSF2*

CSF2

colony stimulating factor 2 (granulocyte-macrophage)

2.57

AJ692384

GLMN

glomulin, FKBP associated protein

2.01

CO876411

THY1

Thy-1 cell surface antigen

2.10

pTGFB1*

TGFB1

transforming growth factor beta 1

2.32

  1. A single accession number is listed for genes represented by multiple clones. Average fold differences were calculated when multiple clones represented a transcript. * pTGFB1 and pCSF2 are amplicons generated specifically for the Bov20K cDNA microarray.