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Table 1 General features of genomes used in this study

From: Pan-genome analysis of the emerging foodborne pathogen Cronobacterspp. suggests a species-level bidirectional divergence driven by niche adaptation

Strain

C. malonaticusLMG 23826

C. dub. dublinensisLMG 23823

C. dub. lausannensisLMG 23824

C. dub. lactaridiLMG 23825

C. muytjensiiATCC 51329

C. universalisNCTC 9529

C. sakazakiiATCC BAA-894a

C. turicensisz3032a

Contigs/chromosomes

69

41

105

96

32

16

1 + 2 plasmids

1 + 3 plasmids

Mean contig length

64,056

113,291

43,937

46,393

136,123

274,265

N/A

N/A

Scaffolds

4

14

15

10

4

8

N/A

N/A

Mean sequence gap length

297

246

692

98

285

166

N/A

N/A

Genome size (bp)

4,419,871

4,644,913

4,613,339

4,453,746

4,355,922

4,388,239

4,530,777

4,599,092

CDS

4,041

4,172

4,123

4,077

3,973

3,977

4,211

4,296

G + C%

54.99

56.16

56.84

56.87

56.17

55.79

56.7

57.2

Coverage of contigs

15.33

20.28

13.8

14.63

17.36

25.38

N/A

N/A

tRNAs

79

85

92

86

81

89

82

86

rRNA operons

7

7

7

7

7

7

7

7

  1. aC. sakazakii strain BAA-894 and C. turicensis strain z3032 were previously sequenced and are considered to be closed reference genomes [20, 22].