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Table 5 HapMap CEU datasets

From: Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method

 

1M

660W

Omni1

CytoSNP12

Accession

GSE16894

GSE17208

GSE17197

GSE17123

# Trios

27

27

27

27

Markers

1128030

634750

1014080

277297

CNV-specific

29367

62095

88450

467

Date Processed

5/19/2008

2/10/2009

6/29/2009

7/1/2009

Abnormalities:

    

AMP

77

63

84

18

DEL

225

248

277

8

HD

401

3877

4231

17

UPhD

0

0

0

0

UPiD

9

13

10

6

Unk

159

50

108

20

Total

871

4251

4710

69

  1. 1M: Human1M-Duov3; 660W: Human660W-Quadv1; Omni1: HumanOmni1-Quadv1; CytoSNP12: HumanCytoSNP-12v2-1; Accession: accession identifier in the NCBI GEO database; Markers: approximate number of autosomal markers following conversion; CNV-specific: the number of autosomal CNV-specific probes; Date Processed: the processing date reported in the Illumina final report. AMP amplification, DEL hemizygous deletion, HD homozygous deletion, UPhD uniparental heterodisomy, UPiD uniparental isodisomy, Unk detected abnormalities of undetermined type.