Table 9 Large abnormalities in AGRE samples
ID | Chr | Loc | Type | PO | SNPs | Inf | Det | mBAF | LRR | #Reg |
|---|---|---|---|---|---|---|---|---|---|---|
AU002503 | 12 | pT | UPiD | F | 3882 | 603 | POD | 0.73 | 0.022 | 1 |
AU0025312 | 17 | pT | UPiD | F | 4221 | 670 | POD | 0.61 | 0.001 | 1 |
AU005304 | 5 | W | NA | M(C) | 23269 | 881 | POD | 0.51 | 0.017 | 4 |
AU016404 | 6 | pT | DEL | M | 8574 | 1365 | POD | 0.80 | −0.385 | 1 |
AU016404 | 15 | qT | AMP | F | 5964 | 967 | POD | 0.62 | 0.249 | 1 |
AU031003 | 5 | qT | NA | F(C) | 9497 | 363 | POD | 0.51 | 0.000 | 4 |
AU038006 | 21 | W | UPiD | F | 8140 | 722 | POD | 0.54 | 0.002 | 1 |
AU060704 | 7 | qT | NA | M(C) | 14016 | 508 | POD | 0.51 | −0.095 | 1 |
AU070003 | 11 | qT | UPiD | M | 14593 | 2580 | MI1 | 0.82 | 0.013 | 3 |
AU072004 | 1 | q | NA | F(C) | 19976 | 1299 | POD | 0.53 | −0.007 | 1 |
AU075208 | 6 | qT | DEL | M | 12589 | 1664 | POD | 0.67 | −0.208 | 1 |
AU075208 | 13 | qT | AMP | M | 9961 | 1486 | POD | 0.59 | 0.184 | 1 |
AU075307 | 21 | W | AMP | M | 8250 | 882 | POD | 0.65 | 0.331 | 1 |
AU077705 | 12 | qT | NA | M(C) | 5016 | 854 | POD | 0.65 | 0.084 | 1 |
AU078803 | 9 | W | AMP | M | 26873 | 3833 | POD | 0.58 | 0.161 | 2 |
AU0871303 | 5 | W | NA | F(C) | 33022 | 1966 | POD | 0.53 | 0.067 | 2 |
AU0871303 | 11 | qT | NA | F(C) | 5178 | 263 | POD | 0.52 | 0.048 | 1 |
AU0871303 | 12 | W | AMP | M | 26968 | 1870 | POD | 0.53 | 0.150 | 2 |
AU0903303 | 6 | W | NA | F(C) | 35910 | 1969 | POD | 0.52 | −0.063 | 2 |
AU0924301 | 12 | W | NA | M(C) | 27011 | 2153 | POD | 0.53 | 0.073 | 2 |
AU0962301 | 12 | W | NA | F(C) | 17431 | 629 | POD | 0.50 | 0.000 | 4 |
AU0983302 | 3 | pT | UPiD | M | 10954 | 1316 | POD | 0.58 | 0.033 | 1 |
AU1060301 | 3 | qT | UPiD | M | 1890 | 326 | POD | 0.66 | 0.015 | 1 |
AU1157303 | 9 | q | UPiD | M | 15535 | 2086 | POD | 0.57 | 0.026 | 1 |
AU1227303 | 21 | W | AMP | M | 8250 | 553 | POD | 0.65 | 0.291 | 1 |
AU1227304 | 12 | W | NA | M(C) | 26967 | 2321 | POD | 0.53 | 0.057 | 3 |
AU1243301 | 9 | qT | AMP | F | 5779 | 419 | POD | 0.56 | 0.139 | 1 |
AU1277303 | 12 | W | NA | M(C) | 16009 | 649 | POD | 0.50 | −0.036 | 2 |
AU1285302 | 13 | qI | NA | M(C) | 7510 | 982 | POD | 0.54 | 0.114 | 1 |
AU1321301 | 6 | W | NA | F(C) | 35956 | 2604 | POD | 0.52 | −0.069 | 2 |
AU1346302 | 19 | pT | NA | M(C) | 3301 | 291 | POD | 0.53 | 0.012 | 1 |
AU1388302 | 10 | qT | AMP | M | 17918 | 2363 | POD | 0.59 | 0.176 | 1 |
AU1388302 | 11 | qI | AMP | F | 3517 | 498 | POD | 0.59 | 0.093 | 1 |
AU1388302 | 11 | qT | DEL | F | 10173 | 1649 | POD | 0.69 | −0.331 | 1 |
AU1462301 | 9 | W | NA | F(C) | 25921 | 1688 | POD | 0.52 | 0.054 | 2 |
AU1462303 | 6 | pT | UPiD | M | 9294 | 1489 | POD | 0.69 | 0.014 | 1 |
AU1462303 | 9 | q | NA | F(C) | 12655 | 451 | POD | 0.51 | −0.030 | 3 |
AU1497301 | 14 | qI | UPiD | M | 5337 |  | MI1 | 1 | −0.017 | 1 |
AU1497301 | 14 | qI | UPhD | M | 9148 |  | MI1 | 0.52 | −0.002 | 1 |
AU1497301 | 14 | qT | UPiD | M | 3774 | Â | MI1 | 1 | 0.029 | 1 |
AU1529301 | 19 | pT | UPiD | F | 2599 | 374 | POD | 0.56 | −0.005 | 1 |
AU1544303 | 12 | W | NA | M(C) | 26590 | 1885 | POD | 0.52 | 0.053 | 2 |
AU1585303 | 9 | q | NA | F(C) | 14175 | 655 | POD | 0.51 | −0.002 | 3 |
AU1590302 | 6 | pT | NA | F(C) | 7117 | 399 | POD | 0.53 | 0.010 | 1 |
AU1594303 | 6 | W | DEL | M | 38044 | 5388 | POD | 0.59 | −0.132 | 2 |
AU1594303 | 9 | W | AMP | M | 26276 | 2372 | POD | 0.54 | 0.089 | 3 |
AU1601302 | 12 | W | NA | M(C) | 26900 | 1563 | POD | 0.52 | 0.056 | 2 |
AU1650306 | 11 | qT | NA | F(C) | 4955 | 621 | POD | 0.55 | −0.101 | 1 |
AU1650307 | 9 | W | NA | M(C) | 26736 | 2000 | POD | 0.53 | 0.070 | 2 |
AU1695303 | 12 | W | AMP | F | 27318 | 3128 | POD | 0.55 | 0.102 | 2 |
AU1791303 | 9 | W | NA | F(C) | 26393 | 1296 | POD | 0.52 | 0.056 | 3 |
AU1822302 | 16 | p+qC | UPhD | M | 14865 | 1187 | POD | 0.50 | −0.014 | 2 |
AU1822302 | 16 | qT | UPiD | M | 1866 | 344 | POD | 0.91 | −0.025 | 1 |