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Table 2 Candidate genes for broad scale studies of temperature response in the crimson spotted rainbowfish, Melanotaenia duboulayi

From: RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

Seq. description

min. e value

Fold change

Primary gene Ontology

3-keto-steroid reductase-like

5.09E-49

2.25

C:endoplasmic reticulum membrane

hydroxymethylglutaryl- cytoplasmic

9.30E-32

2.25

P:isoprenoid biosynthetic process

smooth muscle cell-specific protein sm22 alpha

1.44E-126

2.28

P:muscle organ development

phospholemman precursor

1.98E-44

2.32

C:membrane

ap-2 complex subunit sigma

1.34E-91

2.32

P:axon guidance

acyl carrier mitochondrial precursor

1.87E-82

2.34

F:phosphopantetheine binding

nadh-cytochrome b5 reductase 2

3.52E-137

2.34

F:cytochrome-b5 reductase activity

sterol-4-alpha-carboxylate 3- decarboxylating-like

7.81E-44

2.36

P:steroid biosynthetic process

retinol-binding protein cellular

3.29E-86

2.38

P:transport

ribosomal rna processing protein 36 homolog

9.82E-58

2.38

C:nucleolus

protein cdv3 homolog

4.64E-64

2.38

C:cytoplasm

nadh dehydrogenase 1 alpha subcomplex subunit 6

1.63E-77

2.41

C:mitochondrial inner membrane

y chain e2~ubiquitin-hect

1.04E-45

2.41

P:endosome transport

monoamine oxidase

0

2.42

P:catecholamine metabolic process

small nuclear ribonucleoprotein sm d2

2.44E-64

2.42

P:ncRNA metabolic process

transketolase

6.63E-137

2.42

F:transketolase activity

rho-class glutathione s-transferase

1.95E-101

2.43

F:transferase activity

thioredoxin domain-containing protein 14 precursor

2.31E-72

2.44

P:cell redox homeostasis

ubiquitin-conjugating enzyme e2 variant 2

1.43E-85

2.45

F:acid-amino acid ligase activity

coiled-coil domain-containing protein 47 precursor

0

2.46

P:embryonic development

ubiquinol-cytochrome c reductase core protein ii

0

2.47

F:metalloendopeptidase activity

3-hydroxy-3-methylglutaryl-coenzyme a synthase 1

8.22E-40

2.99

P:response to tellurium ion

nuclear factor erythroid derived 2-like 1

2.00E-60

3.24

P:heme biosynthetic process

glutathione s-transferase

3.32E-30

5.07

F:glutathione transferase activity

cyclin-dependent kinase inhibitor 1

6.69E-65

5.86

P:cellular response to stimulus

catechol-o-methyltransferase domain-containing protein 1

1.45E-75

−2.44

F:O-methyltransferase activity

period homolog 3

1.01E-173

−2.44

C:cytoplasm

histamine n-methyltransferase

1.19E-130

−2.50

P:respiratory gaseous exchange

scinderin like a

0

−2.50

P:eye development

5-aminolevulinate erythroid- mitochondrial-like

0

−2.50

P:response to hypoxia

55 kda erythrocyte membrane protein

2.00E-91

−2.50

C:intracellular non-membrane-bounded organelle

plakophilin 3

0

−2.50

F:binding

cbp p300-interacting transactivator 3b

5.19E-44

−2.50

C:nucleus

lysosomal alpha-glucosidase-like

0

−2.56

F:carbohydrate binding

actin-binding lim protein 1 long isoform isoform cra_a

4.22E-35

−2.56

P:axon guidance

udp-glucuronosyltransferase 2a2-like isoform 2

1.10E-93

−2.56

F:transferase activity, transferring hexosyl groups

glucose-fructose oxidoreductase domain-containing protein 1-like

4.30E-38

−2.56

C:extracellular region

dual specificity tyrosine-phosphorylation-regulated kinase 1b

0

−2.56

P:protein amino acid autophosphorylation

synaptobrevin homolog ykt6

3.21E-121

−2.56

C:Golgi membrane

serine--pyruvate mitochondrial precursor

2.50E-25

−2.56

P:metabolic process

transmembrane protein 192

6.58E-112

−2.63

C:membrane

protein creg2-like

9.34E-142

−2.63

C:cytoplasmic part

ras-related protein rab-13-like

1.31E-67

−2.63

P:vesicle-mediated transport

c-jun-amino-terminal kinase-interacting protein 4 isoform partial

0

−2.63

F:protein binding

histone-lysine n-methyltransferase setd3-like

3.00E-148

−2.63

P:peptidyl-lysine monomethylation

peroxisome proliferator-activated receptor alpha

2.04E-78

−2.86

P:steroid hormone mediated signaling pathway

cytochrome p450 1a

5.02E-152

−3.70

C:endoplasmic reticulum membrane

thyrotrophic embryonic factor

9.16E-157

−3.85

P:cellular response to light stimulus

nuclear receptor subfamily 1 group d member 2

3.54E-102

−4.17

P:steroid hormone mediated signaling pathway

vitellogenin ab

0

−10.0

F:lipid transporter activity

  1. Genes correspond to transfrags with mid-range differential expression values that match metabolic, developmental, or immune response processes from gene ontology assignment by the Blast2Go program. Gene ontology abbreviations: P= biological process, F= molecular function, C= cellular component.