Skip to main content

Table 3 Putative breed-specific selective sweeps identified using the AFFXB1P data

From: Detection of selective sweeps in cattle using genome-wide SNP data

Breed BTA UMD3.1 coordinates (bp) Size (bp) # Total SNP # Fixed SNP # Variable SNP
Angus 1 1,673,108-2,024,737 351,629 235 231 4
  1 111,659,758-111,900,241 240,483 231 221 10
  3 28,196,188-28,405,853 209,665 207 199 8
  6 6,308,164-6,696,861 388,697 74 72 2
  8 70,780,263-71,227,757 447,494 24 24 0
  8 73,538,014-73,760,303 222,289 288 282 6
  11 99,717,097-99,929,710 212,613 63 60 3
  14 3,550,689-3,885,375 334,686 21 21 0
  14 24,631,146-25,173,007 541,861 387 376 11
  18 200,903-406,270 205,367 117 114 3
  20 70,827,025-71,040,113 213,088 30 29 1
  21 1,186,567-1,489,860 303,293 26 25 1
  21 3,091,822-3,417,143 325,321 308 301 7
  25 39,262,249-39,468,067 205,818 21 20 1
  27 36,633,324-36,896,534 263,210 135 130 5
  29 49,557,166-49,922,377 365,211 70 69 1
Brahman 5 48,679,627-48,903,409 223,782 249 237 12
  10 24,519,718-24,794,435 274,717 20 20 0
  22 10,701,509-10,963,520 262,011 88 86 2
Hanwoo 9 1,384,189-1,586,988 202,799 214 211 3
  22 60,772,158-61,015,491 243,333 24 23 1
Simmental 1 83,467,837-83,685,705 217,868 124 118 6
  2 36,576,839-36,828,533 251,694 216 206 10
  2 119,873,146-120,084,764 211,618 158 151 7
  2 121,398,894-121,698,563 299,669 196 188 8
  5 68,631,784-68,857,802 226,018 276 267 9
  7 21,101,050-21,348,345 247,295 65 63 2
  7 52,426,108-52,673,522 247,414 40 38 2
  8 70,246,437-70,540,424 293,987 163 158 5
  10 59,147,189-59,382,774 235,585 190 182 8
  10 72,811,087-73,041,092 230,005 217 210 7
  13 12,236,039-12,524,368 288,329 382 369 13
  13 66,468,866-66,708,674 239,808 153 146 7
  15 82,007,368-82,208,624 201,256 32 32 0
  16 42,555,966-42,788,613 232,647 46 44 2
  16 43,767,572-44,053,904 286,332 186 181 5
  17 13,291,922-13,492,010 200,088 141 136 5
  19 34,588,859-35,435,279 846,420 59 57 2
  22 2,788,408-3,001,597 213,189 216 214 2
  25 26,433,626-26,744,488 310,862 126 120 6
  25 42,202,212-42,775,697 573,485 21 21 0
  28 30,480,640-30,711,987 231,347 254 243 11
  29 39,045,837-39,396,761 350,924 93 91 2
  29 49,052,295-49,273,683 221,388 21 20 1
Wagyu 1 197,944-574,931 376,987 321 313 8
  1 12,544,028-12,840,164 296,136 335 325 10
  2 71,299,739-71,508,079 208,340 177 169 8
  2 136,434,039-136,676,537 242,498 22 21 1
  3 12,027,611-12,227,923 200,312 65 64 1
  3 113,841,208-114,151,444 310,236 189 181 8
  3 117,817,862-118,017,993 200,131 114 110 4
  4 117,846,325-118,095,397 249,072 21 20 1
  4 119,437,108-119,832,270 395,162 26 25 1
  11 33,020,266-33,264,604 244,338 307 293 14
  11 59,513,020-59,783,144 270,124 282 269 13
  11 103,333,722-103,590,033 256,311 33 32 1
  11 105,596,531-105,828,115 231,584 23 22 1
  12 23,283-377,340 354,057 137 137 0
  13 15,493,906-15,739,251 245,345 305 301 4
  13 58,016,490-58,335,951 319,461 114 110 4
  16 51,275,719-51,519,519 243,800 39 38 1
  19 53,829,568-54,065,288 235,720 25 24 1
  22 49,088,027-49,456,146 368,119 102 98 4
  24 36,584,702-36,795,576 210,874 224 218 6
  27 17,911,399-18,114,646 203,247 304 289 15