From: Detection of selective sweeps in cattle using genome-wide SNP data
Breed | BTA | UMD3.1 coordinates (bp) | Size (bp) | # Total SNP | # Fixed SNP | # Variable SNP |
---|---|---|---|---|---|---|
Angus | 1 | 1,673,108-2,024,737 | 351,629 | 235 | 231 | 4 |
 | 1 | 111,659,758-111,900,241 | 240,483 | 231 | 221 | 10 |
 | 3 | 28,196,188-28,405,853 | 209,665 | 207 | 199 | 8 |
 | 6 | 6,308,164-6,696,861 | 388,697 | 74 | 72 | 2 |
 | 8 | 70,780,263-71,227,757 | 447,494 | 24 | 24 | 0 |
 | 8 | 73,538,014-73,760,303 | 222,289 | 288 | 282 | 6 |
 | 11 | 99,717,097-99,929,710 | 212,613 | 63 | 60 | 3 |
 | 14 | 3,550,689-3,885,375 | 334,686 | 21 | 21 | 0 |
 | 14 | 24,631,146-25,173,007 | 541,861 | 387 | 376 | 11 |
 | 18 | 200,903-406,270 | 205,367 | 117 | 114 | 3 |
 | 20 | 70,827,025-71,040,113 | 213,088 | 30 | 29 | 1 |
 | 21 | 1,186,567-1,489,860 | 303,293 | 26 | 25 | 1 |
 | 21 | 3,091,822-3,417,143 | 325,321 | 308 | 301 | 7 |
 | 25 | 39,262,249-39,468,067 | 205,818 | 21 | 20 | 1 |
 | 27 | 36,633,324-36,896,534 | 263,210 | 135 | 130 | 5 |
 | 29 | 49,557,166-49,922,377 | 365,211 | 70 | 69 | 1 |
Brahman | 5 | 48,679,627-48,903,409 | 223,782 | 249 | 237 | 12 |
 | 10 | 24,519,718-24,794,435 | 274,717 | 20 | 20 | 0 |
 | 22 | 10,701,509-10,963,520 | 262,011 | 88 | 86 | 2 |
Hanwoo | 9 | 1,384,189-1,586,988 | 202,799 | 214 | 211 | 3 |
 | 22 | 60,772,158-61,015,491 | 243,333 | 24 | 23 | 1 |
Simmental | 1 | 83,467,837-83,685,705 | 217,868 | 124 | 118 | 6 |
 | 2 | 36,576,839-36,828,533 | 251,694 | 216 | 206 | 10 |
 | 2 | 119,873,146-120,084,764 | 211,618 | 158 | 151 | 7 |
 | 2 | 121,398,894-121,698,563 | 299,669 | 196 | 188 | 8 |
 | 5 | 68,631,784-68,857,802 | 226,018 | 276 | 267 | 9 |
 | 7 | 21,101,050-21,348,345 | 247,295 | 65 | 63 | 2 |
 | 7 | 52,426,108-52,673,522 | 247,414 | 40 | 38 | 2 |
 | 8 | 70,246,437-70,540,424 | 293,987 | 163 | 158 | 5 |
 | 10 | 59,147,189-59,382,774 | 235,585 | 190 | 182 | 8 |
 | 10 | 72,811,087-73,041,092 | 230,005 | 217 | 210 | 7 |
 | 13 | 12,236,039-12,524,368 | 288,329 | 382 | 369 | 13 |
 | 13 | 66,468,866-66,708,674 | 239,808 | 153 | 146 | 7 |
 | 15 | 82,007,368-82,208,624 | 201,256 | 32 | 32 | 0 |
 | 16 | 42,555,966-42,788,613 | 232,647 | 46 | 44 | 2 |
 | 16 | 43,767,572-44,053,904 | 286,332 | 186 | 181 | 5 |
 | 17 | 13,291,922-13,492,010 | 200,088 | 141 | 136 | 5 |
 | 19 | 34,588,859-35,435,279 | 846,420 | 59 | 57 | 2 |
 | 22 | 2,788,408-3,001,597 | 213,189 | 216 | 214 | 2 |
 | 25 | 26,433,626-26,744,488 | 310,862 | 126 | 120 | 6 |
 | 25 | 42,202,212-42,775,697 | 573,485 | 21 | 21 | 0 |
 | 28 | 30,480,640-30,711,987 | 231,347 | 254 | 243 | 11 |
 | 29 | 39,045,837-39,396,761 | 350,924 | 93 | 91 | 2 |
 | 29 | 49,052,295-49,273,683 | 221,388 | 21 | 20 | 1 |
Wagyu | 1 | 197,944-574,931 | 376,987 | 321 | 313 | 8 |
 | 1 | 12,544,028-12,840,164 | 296,136 | 335 | 325 | 10 |
 | 2 | 71,299,739-71,508,079 | 208,340 | 177 | 169 | 8 |
 | 2 | 136,434,039-136,676,537 | 242,498 | 22 | 21 | 1 |
 | 3 | 12,027,611-12,227,923 | 200,312 | 65 | 64 | 1 |
 | 3 | 113,841,208-114,151,444 | 310,236 | 189 | 181 | 8 |
 | 3 | 117,817,862-118,017,993 | 200,131 | 114 | 110 | 4 |
 | 4 | 117,846,325-118,095,397 | 249,072 | 21 | 20 | 1 |
 | 4 | 119,437,108-119,832,270 | 395,162 | 26 | 25 | 1 |
 | 11 | 33,020,266-33,264,604 | 244,338 | 307 | 293 | 14 |
 | 11 | 59,513,020-59,783,144 | 270,124 | 282 | 269 | 13 |
 | 11 | 103,333,722-103,590,033 | 256,311 | 33 | 32 | 1 |
 | 11 | 105,596,531-105,828,115 | 231,584 | 23 | 22 | 1 |
 | 12 | 23,283-377,340 | 354,057 | 137 | 137 | 0 |
 | 13 | 15,493,906-15,739,251 | 245,345 | 305 | 301 | 4 |
 | 13 | 58,016,490-58,335,951 | 319,461 | 114 | 110 | 4 |
 | 16 | 51,275,719-51,519,519 | 243,800 | 39 | 38 | 1 |
 | 19 | 53,829,568-54,065,288 | 235,720 | 25 | 24 | 1 |
 | 22 | 49,088,027-49,456,146 | 368,119 | 102 | 98 | 4 |
 | 24 | 36,584,702-36,795,576 | 210,874 | 224 | 218 | 6 |
 | 27 | 17,911,399-18,114,646 | 203,247 | 304 | 289 | 15 |