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Table 4 Putative selective sweep regions detected in at least two breeds using AFFXB1P data

From: Detection of selective sweeps in cattle using genome-wide SNP data

Breeds BTA UMD3.1 coordinates (bp) Size (bp) # Total SNP # Fixed SNP # Variable SNP
Angus 6 5,639,799-5,993,214 353,415 95 92 3
Simmental, Wagyu, Hanwoo   5,639,799-5,993,214 353,415 95 94 1
Angus, Simmental, Wagyu 6 106,844,116-107,308,280 464,164 21 20 1
Simmental 7 4,344,221-4,677,474 333,253 22 21 1
Hanwoo   4,443,937-4,838,781 394,844 90 88 2
Angus 7 51,000,141-51,430,242 430,101 406 391 15
Simmental   51,144,109-51,788,442 644,333 477 469 8
Wagyu 14 2,098,182-2,588,143 489,961 29 29 0
Hanwoo   2,097,493-2,603,935 506,442 31 30 1
Angus 16 44,463,682-44,881,229 417,547 213 203 10
Simmental   44,693,447-45,207,060 513,613 162 158 4
Angus 16 45,386,065-45,652,672 266,607 248 238 10
Simmental   45,386,065-45,677,279 291,214 286 280 6
Simmental 16 49,400,423-49,679,673 279,250 22 21 1
Wagyu   49,400,423-49,661,831 261,408 20 20 0
Simmental 16 52,629,624-52,857,759 228,135 30 30 0
Wagyu   52,629,624-52,857,759 228,135 30 29 1
Wagyu 17 69,501,174-69,703,717 202,543 116 112 4
Wagyu   69,953,291-70,183,461 230,170 145 140 5
Hanwoo   69,705,850-70,283,199 577,349 421 402 19
Simmental 17 73,619,837-73,975,539 355,702 24 24 0
Wagyu   73,761,834-74,325,363 563,529 57 55 2
Angus 18 14,725,181-14,973,411 248,230 107 102 5
Simmental   14,725,181-14,973,411 248,230 107 104 3
Angus 18 53,342,619-53,596,733 254,114 53 51 2
Simmental   53,342,619-53,573,919 231,300 46 44 2
Angus 19 57,106,999-57,377,040 270,041 26 25 1
Simmental   57,065,941-57,377,040 311,099 28 28 0
Angus 20 71,679,859-72,012,001 332,142 37 36 1
Simmental   71,780,338-72,012,001 231,663 29 28 1
Angus 21 2,134-742,281 740,147 422 408 14
Simmental   2,134-326,342 324,208 187 179 8
Angus, Simmental 21 1,727,412-2,142,823 415,411 30 29 1
Angus 21 70,948,810-71,284,393 335,583 23 22 1
Hanwoo   71,112,766-71,575,370 462,604 32 31 1
Angus 26 21,432-718,976 697,544 242 234 8
Simmental   21,432-723,266 701,834 250 244 6
Wagyu   21,432-225,284 203,852 30 29 1
Wagyu   249,534-454,031 204,497 81 77 4
Hanwoo   21,432-454,031 432,599 121 119 2
Simmental 29 1,156-558,130 556,974 155 153 2
Wagyu   105,179-536,644 431,465 122 120 2
Hanwoo   315,440-558,130 242,690 90 86 4