Table 2 Summary information on identified RAYTs and their cognate REP elements in sequenced stenotrophomonads
RAYT/REP symbol | RAYT accession number | Cognate REP sequence | |
|---|---|---|---|
Orthogroup I | SM1 | YP_001970973 (S. maltophilia K279a) | GGTGG GTGCCGACCGTTGGTCGGCAC |
SM2 | YP_002708831 (S. sp. SKA14) | GGTGG GTGCCAACCTTGGTTGGCAC | |
SM3 | YP_006183766 (S. maltophilia D457) | GTAGwTGCCAACCTTGGTTGGCA | |
Orthogroup II | SM4 | YP_002706198 (S. sp. SKA14) | GTrG ATCCACGCCATGCGTGGAT |
SM5 | n.a. | GTAG AGCCACCCCATGGGTGGCT | |
Orthogroup III | SM6 | n.a. | GGTAG AGTCGACTGTTAGTCGACT |
SM7 | n.a. | GTAG mGCCGGGyTCTrCCCGGCk | |
NO * | SM8 | YP_001972572 (S. maltophilia K279a) | GGTAG TGCCGGCCGCTGGCCGGCA |
NO * | SM9 | YP_002030358 (S. maltophilia R551-3) | TGTAG AGCCGAGCCCATGCTCGGCT |
NO * | SM10 | YP_002029847 (S. maltophilia R551-3) | GGTAG CGCCGGGCCATGCCCGGCG |
NO * | SM11 | YP_004793143 (S. maltophilia JV3) | TGTAG AGTCGAGCCATGCTCGACT |
NO * | SM12 | n.a. | GTAG AGTCGAGCTTGCTCGACT |
NO * | SM13 | n.a. | GTAG AGCCGACCGTTGGTCGGCT |