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Table 4 The abundances of 13 REP classes in genomes of 10 sequenced stenotrophomonads

From: Evolution of REP diversity: a comparative study

Bacterial strain

Clade

REP copy number

Ortho group I*

Ortho group II*

Ortho group III*

NO*

NO*

NO*

NO*

NO*

NO*

SM

SM

SM

SM

SM

SM

SM

SM

SM

SM

SM

SM

SM

1

2

3

4

5

6

7

8

9

10

11

12

13

S. maltophilia PML168

A

1

0

0

5

18

0

0

37

0

2

1

0

96

S. maltophilia S028

0

0

0

0

0

0

45

3

0

4

0

0

4

S . maltophilia R551-3

no

39

4

16

62

1

6

0

266

49

259

49

18

0

S. sp. SKA-14

no

7

37

12

128

1

0

0

323

3

7

31

82

2

S . maltophilia D457

B

31

8

18

37

2

3

0

258

92

5

15

0

2

S . maltophilia JV3

57

4

7

183

2

1

0

283

9

10

108

1

1

S. maltophilia RR-10

C

18

8

10

98

0

6

0

47

106

120

15

2

0

P. geniculata N1

33

7

10

99

1

12

0

61

116

107

18

1

0

S . maltophilia K279a

52

16

11

105

2

33

0

427

7

13

3

2

1

S. maltophilia Ab55555

55

13

9

102

4

31

0

375

6

12

3

1

1

  1. The values represent total numbers of REP sequences from Table 2 in different strains´ genomes. The values are denoted in bold and underlined in cases where RAYT gene associated with a particular REP class is present in the genome. Presence of pseudogenized RAYT genes, containing nonsense or frameshift mutations or deletions, is denoted by italics. The phylogenetic groups are marked with letters A to C as in Figure 2. The names of strains whose complete genomic sequences were determined are in bold.
  2. * - as in Table 2.
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BMC Genomics

ISSN: 1471-2164

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