Skip to main content

Table 7 A list of duplicated genes on LG8

From: Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements

Gene ID

Gene identity

Nature of duplication

Duplication in zebrafish

Zebrafish chromosome locations

ENSDARG00000020857

Coiled-coil domain containing 149b

Inter-chr

+

Chr1: 40,426,579-40,445,530

Chr7: 73,934,667-73,961,321

ENSDARG00000078251

Testis-specific kinase 1

Inter-chr

+

Chr1: 40,601,010-40,619,684

Chr7: 25,695,507-25,738,547

ENSDARG00000011233

Phosphate cytidylyltransferase 1, choline, alpha a

Inter-chr

+

Chr2: 9,544,319-9,572,728

Chr18: 44,426,569-44,436,626

ENSDARG00000011600

Eph receptor a4b

Inter-chr

+

Chr2: 40,081,937-40,266,727

Chr24: 28,418,728-28,585,492

ENSDARG00000014692

Zinc finger protein 622

Inter-chr

-

Chr2: 41,536,204-41,544,585

-

ENSDARG00000014986

Activin a receptor, type i like

Inter-chr

+

Chr2: 41,563,236-41,583,420

Chr23: 28,076,284-28,097,688

ENSDARG00000045137

Histamine receptor h4

Inter-chr

+

Chr2: 1,358,788-1,372,630

Chr22: 1,111,647-1,145,152

ENSDARG00000053293

Fintrim family, member 14

Inter-chr

+

Chr2: 43,232,265-43,236,818

Chr2: 43,804,098-43,806,620

ENSDARG00000054746

Udp-glucose:glycoprotein glucosyltransferase 1

Inter-chr

-

Chr2: 40,583,387-40,642,628

-

ENSDARG00000062991

Abl-interactor 1b

Inter-chr

+

Chr2: 9,651,729-9,704,711

Chr24: 6,018,848-6,096,165

ENSDARG00000067818

Replicase/helicase/endonuclease

Inter-chr

-

Chr3: 44,040,671-44,043,730

-

ENSDARG00000093045

Protein nlrc3-like

Inter-chr

+

Chr4: 49,816,584-49,827,190

Chr1: 37,643,376-37,652,927

ENSDARG00000001241

Poly-u binding splicing factor b

Inter-chr

+

Chr7: 43,876,256-43,887,769

Chr2: 32,371,845-32,389,729

ENSDARG00000032458

Map/microtubule affinity-regulating kinase 2

Inter-chr

+

Chr7: 26,056,874-26,144,251

Chr21: 26,599,159-26,667,051

ENSDARG00000056690

Myotubularin related protein 1a

Inter-chr

+

Chr7: 26,984,248-27,002,780

Chr21: 33,053,927-33,084,023

ENSDARG00000068557

5-hydroxytryptamine (serotonin) receptor 5a like

Inter-chr

+

Chr7: 43,811,481-43,832,125

Chr2: 29,650,026-29,653,812

ENSDARG00000069463

Arachidonate 12-lipoxygenase

Inter-chr

-

Chr7: 27,155,574-27,173,814

-

ENSDARG00000070107

Sine oculis homeobox homolog 7

Inter-chr

+

Chr7: 8,229,740-8,248,372

Chr13: 9,823,203-9,826,579

ENSDARG00000074367

Ubiquitin carboxyl-terminal hydrolase

Inter-chr

+

Chr7: 52,780,107-52,812,002

Chr20: 23,071,313-23,099,240

ENSDARG00000074813

Bloodthirsty-related gene family, member 5

Intra-chr

+

Chr7: 16,963,727-16,970,800

Chr7: 16,970,942-16,980,218

ENSDARG00000075485

Kinesin light chain 2

Inter-chr

+

Chr7: 7,710,099-7,745,347

Chr22: 41,392,590-41,425,645

ENSDARG00000075647

Grb10 interacting gyf protein 1

Inter-chr

+

Chr7: 22,013,314-22,051,954

Chr7: 22,066,424-22,077,128

ENSDARG00000076302

Deltex homolog 4

Inter-chr

+

Chr7: 19,772,977-19,815,910

Chr1: 41,879,456-41,911,414

ENSDARG00000079906

Calcium channel, voltage-dependent, beta 2a

Inter-chr

+

Chr7: 74,455,736-74,500,031

Chr3: 15,773,660-15,847,471

ENSDARG00000090874

Leukocyte immune-type receptor 3 precursor

Inter-chr

+

Chr7: 7,161,386-7,169,236

Chr7: 6,472,649-6,485,064

ENSDARG00000025789

Chromodomain helicase dna binding protein 4

Inter-chr

+

Chr16: 33,984,640-34,013,093

Chr19: 5,625,090-5,682,362

ENSDARG00000075603

Bloodthirsty-related gene family, member 20

Inter-chr

+

Chr19: 2,844,513-2,855,533

Chr19: 4,855,762-4,867,193

ENSDARG00000016464

Serine/threonine-protein kinase mrck alpha-like

Inter-chr

+

Chr20: 35,110,850-35,230,881

Chr17: 8,164,393-8,331,381

ENSDARG00000017338

Kinase d-interacting substrate of 220b

Inter-chr

+

Chr20: 29,769,812-29,809,552

Chr17: 34,978,387-35,119,673

ENSDARG00000032238

Dynamin 3

Inter-chr

+

Chr20: 14,733,643-14,839,604

Chr5: 66,937,070-67,009,337

ENSDARG00000059933

Phosphatidic acid phosphatase type 2b

Inter-chr

-

Chr20: 8,143,071-8,201,815

-

ENSDARG00000004988

Protein phosphatase 3, catalytic subunit, alpha isozyme

Inter-chr

+

Chr21: 28,352,865-28,470,208

Chr14: 7,770,521-7,857,833

ENSDARG00000078791

General transcription factor ii-i repeat domain-containing protein 2-like

Inter-chr

+

Chr22: 8,348,278-8,349,747

Chr15: 10,383,223-10,384,977

ENSDARG00000052330

Solute carrier family 4, anion exchanger, member 2b

Inter-chr

+

Chr24: 34,531,261-34,600,148

Chr2: 32,109,772-32,175,798

ENSDARG00000071501

Heparan sulfate 6-o-sulfotransferase 1b

Inter-chr

+

Chr24: 28,654,200-28,749,436

Chr9: 30,372,294-30,460,884