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Table 1 Gene ontology analysis results of target sequences that are up or down regulated in the Li 1 mutant at 12 DPA or 16 DPA

From: Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li 1 )

Category Gene ontology categorization* Representative annotations of probed sequences (Li1/Wt expression ratio)
Unique to 12 DPA Response to hormone stimulus GO:0009725 (0.00023)
   eg. indole-3-acetic acid-amido synthetase (0.48), xyloglucan endotransglucosylase (2.2), shaggy-related kinase (2.1), auxin-responsive protein (.34) and auxin response (0.42).
  Response to cytokinin stimulus GO:0009735 (0.00014)
   eg. ap2 erf domain-containing transcription factor (2.1), homeobox protein knotted-1-like 3-like (2.1)
  Transmembrane receptor protein tyr kinase signaling pathway GO:0007169 (1.9e-06)
   e.g. strubbelig-receptor family 7 protein (0.45), lrr receptor-like serine threonine-protein kinase (0.35),
  Protein amino acid phosphorylation GO:0006468 (1.5e-05)
   e.g. cyclin-dependent kinase f-4-like (0.48), shaggy-related protein kinase eta-like (2.07), serine threonine-protein kinase aurora-1 (.43), feronia receptor-like kinase (0.43)
  Hydrolase activity, hydrolyzing O-glycosyl compounds GO:0004553 (3e-07)
   e.g. cobra-like 4 protein (3.74), beta galactosidase 1 (0.46), xyloglucan endotransglucosylase hydrolase (0.44), acidic chitinase (3.32), xyloglucan endotransglucosylase hydrolase protein 2 (2.33), beta-xylosidase alpha-l-arabinofuranosidase 2-like (0.43)
  Xyloglucan:xyloglucosyl transferase activity GO:0016762 (0.00016)
   e.g. xyloglucan endotransglucosylase hydrolase (0.41), xyloglucan endotransglucosylase hydrolase protein 2 (2.33), probable xyloglucan endotransglucosylase hydrolase protein 32-like (2.56)
  Protein kinase activity GO:0004672 (0.00075)
   serine threonine-protein kinase (3.12), probable receptor-like serine threonine-protein kinase at5g57670-like (11.02)
Unique to 16 DPA Cellular nitrogen compound metabolic process GO:0034641 (1.1e-05)
   glutamine synthetase (2.05), phenylalanine ammonia-lyase (0.26), asparagine synthetase (2.06), serine threonine protein kinase 2 (3.23)
  1. *e-value in parenthesis.