Transcript profiling by microarray and marker analysis of the short cotton (Gossypium hirsutum L.) fiber mutant Ligon lintless-1 (Li 1 )

Table 3 Microarray expression ratios of Li ₁ /WT and corroboration by RT-qPCR analysis*

		3DPA		12DPA		16DPA
		Micro-array	RT-qPCR	Micro-array	RT-qPCR	Micro-array	RT-qPCR
GhiAffx.58712.1.S1_at	cellulose synthase catalytic subunit	0.93	0.84	0.39	0.34	0.51	0.49
Ghi.3562.1.A1_at	cellulose synthase-like protein e6-like	0.49	0.70	1.17	1.32	2.24	1.94
Ghi.5057.1.S1_s_at	protein wax2	0.47	0.41	0.59	0.46	0.42	0.29
Ghi.6485.1.S1_s_at	pathogenesis-related protein 10	1.34	1.51	70.42	127.01	77.04	191.91
Gra.3004.2.S1_s_at	expansin a10	0.82	0.82	0.46	0.38	0.46	0.33
Ghi.6465.2.S1_at	expansin-like b1	0.99	0.40	6.32	6.74	10.12	0.37
Gra.2056.1.A1_s_at	beta-galactosidase 13	0.23	0.12	0.09	0.05	0.17	0.11
Ghi.1314.1.S1_x_at	Tubulin alpha 4 (Tua 4)	0.91	0.57	0.88	0.49	1.02	0.80

*Bold and underlined indicates significant at the Bonferroni-corrected 0.05 probability level for microarray data and at the 0.05 probability as determined by a two-tailed t-test for qPCR data.

ISSN: 1471-2164