Table 2 Contigs and singletons summary statistics for first round and final assembly by MIRA of A. naccarii transcriptome
From: Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon
| Â | Round 1 | Final assembly |
|---|---|---|
Reads assembled (#) | 256,738 | 256,738 |
Reads assembled (%) | 77.43 | 77.43 |
Total contigs (#) | 44,232 | 42,193 |
Contigs (%) | 72.72 | 76.32 |
Total contigs length (Mb) | 22.64 | 21.87 |
Average contigs length (bp) | 511.89 | 518.29 |
Average contigs GC content (%) | 38.49 | 38.83 |
Average contigs quality (phred) | 43 | 43 |
Average contigs coverage (bp/position) | 3.2 | 4.09 |
Total singletons (#) | 16,593 | 13,089 |
Singletons (%) | 27.28 | 23.68 |
Total singleton length (Mb) | 4.98 | 3.91 |
Average singleton length (bp) | 300.19 | 298.55 |
Average singleton GC content (%) | 38.39 | 38.46 |
Average singleton quality (phred) | 28 | 28 |