Skip to main content

Table 4 TBLASTX best hit (e-value < 1e-03) of A. naccarii

From: Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

  Lamprey Coelacanth Danio Stickleback Medaka Fugu Tetraodon Human
reference cDNAs (#) 11,476 21,958 48,636 27,628 24,662 48,003 23,265 180,654
reference genes (#) 10,449 19,174 27,948 20,839 19,687 18,685 19,749 47,266
A. naccarii ESTs with hit on reference cDNAs (#) 7,431 12,428 13,068 11,528 11,270 11,143 10,886 12,740
A. naccarii ESTs with hit on reference cDNAs (%) 13.44 22.48 23.64 20.85 20.39 20.16 19.69 23.05
reference genes identified (#) 3,499 5,862 6,396 5,710 5,565 5,447 5,429 6,116
reference genes identified (%) 33.49 30.57 22.89 27.4 28.27 29.15 27.49 12.94
  1. Sequences from known-, novel- and pseudo-gene predictions, from Ensembl realise 66, were collected for the following species: Petromyzon marinus, Latimeria chalumnae, Danio rerio, Gasterosteus aculeatus, Oryzias latipes, Takifugu rubripes, Tetraodon nigroviridis and Homo sapiens. A. naccarii transcriptome sequences were searched against each database. For each sequence, the best hit was annotated.