Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

BMC Genomics

Table 5 BLASTX best hit (e-value < 1e-03) of A. naccarii

	Lamprey	Coelacanth	Danio	Stickleback	Medaka	Fugu	Tetraodon	Human
reference proteins (#)	11,429	21,817	41,693	27,576	24,661	47,841	23,118	97,041
reference genes (#)	10,402	19,033	26,160	20,787	19,686	18,523	19,602	21,860
*A. naccarii ESTs with hit on reference proteins (#)*	*7,052*	*11,264*	*11,530*	*11,010*	*10,816*	*10,766*	*10,359*	*11,102*
A. naccarii ESTs with hit on reference proteins (%)	12.76	20.38	20.86	19.92	19.57	19.47	18.74	20.08
reference genes identified (#)	3,326	5,565	5,865	5,526	5,403	5,346	5,283	5,478
*reference genes identified (%)*	*31.97*	*29.24*	*22.42*	*26.58*	*27.45*	*28.86*	*26.95*	*25.06*

Best hits from the alignment of A. naccarii transcriptome sequences against all translations from known-, novel- and pseudo-gene predictions in Ensembl realise 66 for the different species considered in this work.

ISSN: 1471-2164