Skip to main content

Table 5 BLASTX best hit (e-value < 1e-03) of A. naccarii

From: Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

  Lamprey Coelacanth Danio Stickleback Medaka Fugu Tetraodon Human
reference proteins (#) 11,429 21,817 41,693 27,576 24,661 47,841 23,118 97,041
reference genes (#) 10,402 19,033 26,160 20,787 19,686 18,523 19,602 21,860
A. naccarii ESTs with hit on reference proteins (#) 7,052 11,264 11,530 11,010 10,816 10,766 10,359 11,102
A. naccarii ESTs with hit on reference proteins (%) 12.76 20.38 20.86 19.92 19.57 19.47 18.74 20.08
reference genes identified (#) 3,326 5,565 5,865 5,526 5,403 5,346 5,283 5,478
reference genes identified (%) 31.97 29.24 22.42 26.58 27.45 28.86 26.95 25.06
  1. Best hits from the alignment of A. naccarii transcriptome sequences against all translations from known-, novel- and pseudo-gene predictions in Ensembl realise 66 for the different species considered in this work.