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Table 6 BLASTN best hit (e-val < 1e-03) of A. naccarii transcriptome against non-coding RNA genes from Ensembl database

From: Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

  Lamprey Coelacanth Danio Stickleback Medaka Fugu Tetraodon Human
reference ncRNA (#) 2,628 2,918 4,431 1,617 735 703 813 9,399
A. naccarii ESTs with hit (#) 4 17 28 29 19 21 31 62
A. naccarii ESTs with hit (%) 0.01 0.03 0.11 0.05 0.05 0.03 0.04 0.06
reference ncRNA identified (#) 4 7 11 11 11 7 13 23
reference ncRNA identified (%) 0.15 0.24 0.25 0.68 1.5 1 1.6 0.24
  1. All non-coding RNA genes and pseudogenes in Ensembl realise 66 for the different species were searched against A. naccarii transcriptome.
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