Table 2 Genes showing differential expression between salmon louse strains differing in EMB susceptibility
Accession no. | Annotation | Experiment 1 | Experiment 2 | ||
|---|---|---|---|---|---|
Fold change (PT/S) | p-value | Fold change (PT/S) | p-value | ||
Ligand gated ion channel (<1%) | Ā | Ā | Ā | Ā | |
ADD24187.1 | Neuronal acetylcholine receptor subunit alpha-3 | -3.21 | 7.59E-05 | -2.52 | 4.29E-03 |
Metabolism of xenobiotics (<1%) | Ā | Ā | Ā | Ā | |
ACO15001.1 | Cytochrome P450 3A24 | -1.48 | 1.95E-03 | -1.31 | 4.13E-02 |
Regulation of synapse development (<1%) | Ā | Ā | Ā | Ā | |
ADD24462.1 | Cerebellin-3 | -1.86 | 3.60E-04 | -4.91 | 3.53E-06 |
Eye lens proteins (<1%) | Ā | Ā | Ā | Ā | |
ADD38111.1 | Beta-crystallin A1 | 2.33 | 6.79E-05 | 1.37 | 1.35E-02 |
Transporters (2%) | Ā | Ā | Ā | Ā | |
NP_001116712.1 | Solute carrier family 8 (sodium/calcium exchanger) | -2.10 | 3.63E-04 | -4.38 | 1.74E-05 |
EFX88361.1 | Alpha subunit of Na+/K+ ATPase | -1.67 | 2.21E-04 | -2.08 | 5.34E-05 |
ACO12613.1 | Excitatory amino acid transporter 3 | -1.42 | 1.10E-04 | -1.34 | 4.96E-02 |
Cytoskeleton proteins (26%) | Ā | Ā | Ā | Ā | |
ADD38332.1 | Troponin I | -1.77 | 4.85E-05 | -2.61 | 1.17E-06 |
XP_001950563.1 | Muscle LIM protein | -1.67 | 1.57E-04 | -2.30 | 1.32E-06 |
AAA17371.1 | Fast myosin heavy chain | -2.11 | 1.73E-03 | -6.23 | 1.68E-06 |
ACO13186.1 | Myosin light chain alkali | -2.65 | 1.69E-05 | -3.38 | 8.46E-06 |
ACO12924.1 | Myosin light chain alkali | -2.06 | 1.16E-05 | -3.69 | 9.66E-06 |
ABU41018.1 | Collagen alpha-1 chain | -1.38 | 1.51E-03 | -6.85 | 2.61E-05 |
EFV61840.1 | Smoothelin | -1.43 | 4.03E-04 | -1.85 | 6.25E-05 |
ACO12887.1 | Troponin T | -1.73 | 1.04E-03 | -2.93 | 8.12E-05 |
ADV40202.1 | Troponin 1 | -1.94 | 1.87E-03 | -2.93 | 3.23E-04 |
AAW22542.1 | Myosin light chain | -1.76 | 1.00E-03 | -2.23 | 3.73E-04 |
ACO10528.1 | Troponin C, isoform 1 | -1.91 | 1.69E-03 | -2.22 | 5.12E-04 |
ACO12630.1 | Troponin C, isoform 1 | -1.61 | 3.01E-05 | -1.51 | 5.92E-04 |
ACO12421.1 | Tropomodulin | -1.51 | 1.17E-04 | -2.37 | 1.01E-03 |
ACO12794.1 | Troponin C, isoform 1 | -2.07 | 6.14E-05 | -1.60 | 2.85E-03 |
ACO14751.1 | Troponin C, isoform 1 | -2.12 | 4.94E-05 | -1.56 | 4.18E-03 |
ACO11818.1 | Torso-like protein precursor | -1.83 | 5.11E-05 | -1.82 | 9.67E-03 |
ACO11077.1 | Troponin C, isoform 1 | -1.92 | 6.27E-05 | -1.48 | 1.56E-02 |
Regulation of actin cytoskeleton (<1%) | Ā | Ā | Ā | Ā | |
XP_002407362.1 | Paxillin | -2.79 | 8.32E-07 | -1.48 | 2.28E-03 |
Calcium transport (<1%) | Ā | Ā | Ā | Ā | |
NP_001032719.1 | Sarco/endoplasmic reticulum calcium transporting ATPase | -2.15 | 8.58E-07 | -2.46 | 2.15E-04 |
Calcium binding (1%) | Ā | Ā | Ā | Ā | |
XP_002734090.1 | Calmodulin-like | -1.60 | 6.41E-05 | -2.46 | 3.25E-04 |
ACO11757.1 | Sarcoplasmic calcium-binding protein, beta chain | -3.18 | 2.05E-06 | -3.58 | 1.28E-03 |
Cuticle proteins (4%) | Ā | Ā | Ā | Ā | |
ADD24515.1 | Cuticle protein 6 | -2.29 | 1.79E-03 | -12.28 | 4.75E-04 |
ABU41025.1 | Cuticle protein | -2.57 | 2.78E-04 | -12.91 | 1.88E-03 |
ACO14885.1 | Cuticle protein CP14.6 precursor | -1.77 | 7.50E-04 | -3.40 | 4.67E-03 |
Proteolysis (12%) | Ā | Ā | Ā | Ā | |
ADD38666.1 | Matrix metalloproteinase-9 | -2.29 | 1.07E-05 | -7.35 | 1.84E-06 |
ADD38283.1 | Kunitz/BPTI-like toxin | -2.45 | 5.43E-06 | -1.79 | 2.50E-04 |
ABU41053.1 | Metalloproteinase | -5.61 | 7.00E-06 | -4.38 | 3.99E-04 |
BAG74353.1 | Metalloproteinase | 14.83 | 8.20E-05 | 18.61 | 4.64E-04 |
ACO11096.1 | Serine carboxypeptidase CPVL precursor | 1.58 | 2.44E-04 | 1.36 | 1.21E-02 |
ABU41117.1 | Metalloproteinase | -2.72 | 6.62E-05 | -1.41 | 1.82E-02 |
AAS91793.1 | Intestinal trypsin 2 precursor | 7.73 | 1.90E-06 | 1.82 | 2.52E-02 |
AAS91795.1 | Intestinal trypsin 4 precursor | 1.48 | 6.69E-04 | 1.42 | 2.79E-02 |