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Table 2 Comparison of contig mapping coordinates with grapevine annotations, public ESTs and cDNAs

From: De novotranscriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

 

12X assembly

8X assembly

Contigs classification (12x assembly; V1 annotation)

EST

cDNA

v0 annotation

v1 annotation

Contigs assigned to known genes

29442

9968

31221

23905

Contigs assigned to novel genes

2373

300

935

1635

Contigs assigned to private genes

NA

NA

NA

13

  1. Contigs coordinates were compared with those of public ESTs, cDNAs and V0 annotation of 12x assembly and with v1 annotation of 8x assembly. Number of contigs with at least a 50% overlap with the features of interest is reported for each comparison.
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BMC Genomics

ISSN: 1471-2164

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