Table 1 Tape Measure Protein (TMP) sequence identity between mycobacteriophages within subclusters
From: Phage cluster relationships identified through single gene analysis
Sub-cluster | % identical sites | % pairwise identity | Phages included in the comparison for primer design |
|---|---|---|---|
A1 | 71.40% | 85.40% | U2, Switzer, jc27, kssjeb |
A2 | 53.30% | 71.20% | D29, Che12, Trixis, RedRock |
A3 | 69.10% | 87.30% | Vis, BXZ2, Microwolf, JHC117, Methuselah, Rocklstar, HelDan |
A4 | 83.60% | 90.80% | Eagle, Backyardigan, Peaches, LHTSCC |
A5 | 58.30% | 71.60% | George, Airmid, Benedict, Cuco |
A6 | 91.70% | 94.40% | DaCinci, Gladiator, Hammer |
B1 | 98.70% | 99.20% | Harvey, Colbert, Hertubise |
B2 | 98.90% | 99.50% | Ares, Hedgerow, Rosebush, Arbiter, Qyrzula |
B3 | 96.70% | 97.80% | Daisy, Kamiyu, Piperfish |
B4 | 20.40% | 90.80% | Stinger, Zemanar, ChrisnMich, Nigel, Frederick, Cooper |
D | 96.20% | 97.50% | Plot, PBI1, Gumball |
E | 94.80% | 96.50% | Kostya, Lilac, Henry |
F1 | 82.00% | 87.70% | Fruitloop, RockyHorror, Dotproduct |
F2 | 99.10% | 99.00% | Che9d, Yoshi |
G | 100.00% | 100.00% | Halo, BPs, Hope |
H | 46.30% | 60.80% | Predator, Konstantine, Barnyard |
I1&I2 | 65.20% | 80.80% | Brujita, Island3, Babsiella, Che9c |
J | 73.40% | 80.90% | BAKA, LIttleE, Omega |
K1 | 93.80% | 95.80% | Angelica, Adephagia, CrimD |
K2&K3 | 60.50% | 54.30% | TM4, Pixie |
L | 63.40% | 75.00% | Upie, LeBron, Faith |
N | 84.10% | 84.10% | Redi, Charlie |