Table 2 PCR Primers designed on conserved regions of TMP for subcluster mycobacteriophages
From: Phage cluster relationships identified through single gene analysis
Sub-cluster | Forward primers | Reverse primer | Product length |
|---|---|---|---|
A1 | CYGCYGGTAACTTCGGCTCG | CTGGGCYAGCGTCTTCTGC | 704 |
A2 | SCAGGGYCTGATCAACGGC | AGGAACTGCTTSCCAGTCGC | 597 |
A3 | CSTTCAACTTCAACTTCG | AAGATGAACTGCTCRCC | 512 |
A4 | GGTCACGCCGCTKATCTCC | CCGCCGAGTTCCTTCAGC | 588 |
A5 | GATCATCCCGTTCACCGTGG | CRGAGCCGAACGACGGCAGG | 248 |
A5 | SASCTCGAAGCCAAGATCCC | CRGAGCCGAACGACGGCAGG | 849 |
A6 | ACATCGCAARCGCCATCG | TTGATGCCKCCGAGGAAGC | 829 |
B1 | AAAGGTGATCGTGCCCATCG | GAACCTCGTGAACAGGTCGG | 493 |
B3 | CGGAACAARAAGAAGGGCGG | AKGGGCAYACCGCCGACGCC | 205 |
D | CTGGGTGTAGCGGGGTCG | CCTGTTCGGCGTTCTTCTGG | 301 |
E | CCAGTCGTCGCAGAACATCC | CTGYGCGACRTTGCGGAGG | 736 |
F1 | TGTCGGGGTATGAGGGTGC | GRCCCTGCTTCACCCCACC | 303 |
F2 | CCCCCCTGCCACTGTTCC | TTGWAKCCCCGCTTGAACC | 873 |
G | GGCGTCGTCTGGGGATGG | GAGATTGCCGAGCCGATGC | 431 |
H | GGCGGGTTSCTCGCVCTSC | CATCCACCGCATGAGRTTRCC | 632 |
I1&2 | CTGCGSKCCCTGCAGTTCG | GAACTCTTTSAGCGCGTCG | 379 |
K | GGCGTGGGWGTCGATACAGC | GMCCCAGACGATTTGCGTGC | 298 |
GGL | TATGGTGCCGACGCTTGG | GCCAACGMCAAACCGAGC | 317 |
N | GCGATCCCGYATGTCRACGC | CGATGACGTCGTTGCGKGCC | 430 |