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Table 1 Assembled genes with highest expression values in OP and CP libraries

From: Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production

Gene Sequence (top hit) Species Accession E value
OP samples
contig30046_1_155 MRP motif repeat 3 protein precursor Brachionus manjavacas ACV04429.1 5.E-12
contig79431_1_261 MRP motif repeat 4 protein precursor Brachionus manjavacas ACV04427.1 8.E-20
contig101675_1_126 alpha-tubulin Chironomus duplex AAR97873.1 3.E-19
contig93682_1_197 alpha-tubulin Rattus norvegicus EDM01432.1 3.E-42
contig62222_1_158 60S ribosomal protein L4 Pediculus humanus corporis EEB17109.1 5.E-16
contig77623_1_272 MRP motif repeat 3 protein precursor Brachionus manjavacas ACV04429.1 2.E-26
contig28535_1_216 MRP motif repeat 3 protein precursor Brachionus manjavacas ACV04429.1 6.E-30
contig79401_24_340 MRP repeat motif 5 protein precursor Brachionus manjavacas ADU18105.1 7.E-28
contig46700_2_86 tropomyosin isoform 5 Bombyx mori ABF51445.1 3.E-03
contig59544_1_116 ribosomal protein L4 Alligator mississippiensis AEK51829.1 2.E-20
contig66153_2771_3902 60S ribosomal protein L23a Brachionus plicatilis CAQ37753.1 5.E-19
contig06643_1320_1619 ubiquitin/ribosomal S27A fusion protein 3 Aplysia californica AAM09680.1 8.E-27
contig65842_1_441 alpha-tubulin Drosophila persimilis EDW38107.1 2.E-65
contig59965_1450_2062 60S ribosomal protein L38 Brachionus plicatilis CAQ37756.1 2.E-22
contig60736_1_280 ribosomal protein rps23 Arenicola marina ABW23151.1 4.E-13
contig52695_1_821 60S ribosomal protein L35 Epinephelus coioides ADG29172.1 8.E-34
contig11838_1_791 60S ribosomal protein L15 Acromyrmex echinatior EGI70568.1 3.E-43
contig53952_1_403 60S ribosomal L7a-like protein Phragmatopoma lapidosa ADW95788.1 1.E-36
contig59138_1_298 60S acidic ribosomal protein P1 Stomoxys calcitrans ACN69158.1 2.E-15
contig04863_1_209 ribosomal protein S18 Drosophila willistoni EDW74864.1 7.E-05
CP samples
contig30046_1_155 MRP motif repeat 3 protein precursor Brachionus manjavacas ACV04429.1 5.E-12
contig79431_1_261 MRP motif repeat 4 protein precursor Brachionus manjavacas ACV04427.1 8.E-20
contig101675_1_126 alpha tubulin Chironomus duplex AAR97873.1 3.E-19
contig93682_1_197 alpha tubulin Rattus norvegicus EDM01432.1 3.E-42
contig81910_1_195 MRP motif repeat 3 protein precursor Brachionus manjavacas ACV04429.1 3.Eā€‰+ā€‰00
contig28535_1_216 MRP motif repeat 3 protein precursor Brachionus manjavacas ACV04429.1 6.E-30
contig79401_24_340 MRP repeat motif 5 protein precursor Brachionus manjavacas ADU18105.1 7.E-28
contig77623_1_272 MRP motif repeat 3 protein precursor Brachionus manjavacas ACV04429.1 2.E-26
contig52695_1_821 60S ribosomal protein L35 Epinephelus coioides ADG29172.1 8.E-34
GHICQ5101EO836_17_154 polyubiquitin precursor Suberites domuncula CAA72800.1 2.E-21
contig90319_1_114 Gram-negative binding protein 7, partial Daphnia arenata AFI40165.1 3.E-05
contig59965_1450_2062 60S ribosomal protein L38 Brachionus plicatilis CAQ37756.1 2.E-22
contig78014_9_305 hypothetical protein Branchiostoma floridae EEN52859.1 3.E-03
contig46700_2_86 tropomyosin isoform 5 Bombyx mori ABF51445.1 3.E-03
contig06643_1320_1619 ubiquitin/ribosomal S27A fusion protein Aplysia californica AAM09680.1 8.E-27
contig04863_1_209 ribosomal protein S18 Drosophila willistoni EDW74864.1 7.E-05
contig82637_1_255 60S ribosomal protein L12 Brachionus plicatilis CAQ37748.1 9.E-46
contig60736_1_280 ribosomal protein rps23 Arenicola marina ABW23151.1 4.E-13
contig65842_1_441 alpha tubulin Drosophila persimilis EDW38107.1 3.E-65
contig63886_822_2083 voltage-dependent calcium channel beta subunit Strongylocentrotus purpuratus XP_790453 1.E-05
  1. Genes that had a significant BLAST hit in NCBI are shown.