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Table 3 Histone H2A genes identified in OP and CP libraries

From: Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production

 

Locus

BLAST

OP FPKM

CP FPKM

Cuffdiff

edgeR

# A. ricciae transcripts

e value

A. ricciae accession

e value

Organism

RefSeq

p value

q value

p value

FDR

H2A1

contig00755_2006_2354

1.E-33

Nasonia vitripennis

XP_001600014.1

3.03

17.71

0.014

0.124

0.187

1.000

1

3.E-11

HE711327

H2A2

contig03654_1516_2032

1.E-55

Daphnia pulex

EFX87610.1

2.27

57.22

0.000

0.000

0.018

0.500

1

7.E-33

HE689758

H2A3

contig07701_0_378

1.E-19

Adineta vaga

ACH68793.1

1.76

11.43

No Test

0.094

1.000

-

-

-

H2A4

contig12265_530_1237

1.E-64

Xenopus laevis

NP_001086775.1

2803.24

2835.08

0.988

0.994

0.988

1.000

6

2.E-28

HE702063

2.E-60

HE702590

2.E-50

HE703234

4.E-31

HE703984

7.E-33

HE711821

4.E-53

HE714976

H2A5

contig23888_34_960

8.E-68

Xenopus (Silurana) tropicalis

XP_002935049.1

818.68

1038.78

0.746

0.877

0.847

1.000

4

4.E-38

HE689797

9.E-20

HE690440

3.E-21

HE700115

1.E-27

HE706180

H2A6

contig34004_2741_3299

8.E-66

Xenopus laevis

NP_001086775.1

2.54

36.65

0.000

0.005

0.042

0.944

5

7.E-33

HE689758

2.E-28

HE702063

8.E-32

HE707507

8.E-18

HE711090

3.E-11

HE711327

H2A7

contig39260_829_1351

2.E-64

Acropora formosa

P35061.2

243.15

204.85

0.790

0.899

0.740

1.000

-

-

-

H2A8

contig87961_4_298

3.E-51

Gallus gallus

XP_003642635.1

8.38

30.09

0.064

0.285

0.360

1.000

2

5.E-46

HE693848

1.E-16

HE714998

H2A9

contig94637_39_541

3.E-65

Xenopus laevis

NP_001086775.1

4.29

47.78

0.001

0.012

0.070

1.000

1

2.E-56

HE711680

H2A10

contig09212_1061-1926

8.E-26

Mustela putorius furo

AER99544.1

18.87

12.97

0.569

0.778

0.421

1.000

-

-

-

H2A11

contig19788_3764-5623

7.E-38

Oreochromis niloticus

XP_003451495.1

21.08

25.43

0.810

0.909

0.624

1.000

-

-

-

H2AZ1

contig14214_0-584

8.E-56

Cavia porcellus

XP_003462309.1

16.17

27.45

0.398

0.671

0.740

1.000

-

-

-

H2AZ2

contig21808_7858_8553

1.E-54

Ascaris suum

ADY40521.1

238.30

216.52

0.886

0.945

0.932

1.000

-

-

-

  1. No Test = expression values did not meet threshold required for significance testing.