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Table 3 Histone H2A genes identified in OP and CP libraries

From: Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production

  Locus BLAST OP FPKM CP FPKM Cuffdiff edgeR # A. ricciae transcripts e value A. ricciae accession
e value Organism RefSeq p value q value p value FDR
H2A1 contig00755_2006_2354 1.E-33 Nasonia vitripennis XP_001600014.1 3.03 17.71 0.014 0.124 0.187 1.000 1 3.E-11 HE711327
H2A2 contig03654_1516_2032 1.E-55 Daphnia pulex EFX87610.1 2.27 57.22 0.000 0.000 0.018 0.500 1 7.E-33 HE689758
H2A3 contig07701_0_378 1.E-19 Adineta vaga ACH68793.1 1.76 11.43 No Test 0.094 1.000 - - -
H2A4 contig12265_530_1237 1.E-64 Xenopus laevis NP_001086775.1 2803.24 2835.08 0.988 0.994 0.988 1.000 6 2.E-28 HE702063
2.E-60 HE702590
2.E-50 HE703234
4.E-31 HE703984
7.E-33 HE711821
4.E-53 HE714976
H2A5 contig23888_34_960 8.E-68 Xenopus (Silurana) tropicalis XP_002935049.1 818.68 1038.78 0.746 0.877 0.847 1.000 4 4.E-38 HE689797
9.E-20 HE690440
3.E-21 HE700115
1.E-27 HE706180
H2A6 contig34004_2741_3299 8.E-66 Xenopus laevis NP_001086775.1 2.54 36.65 0.000 0.005 0.042 0.944 5 7.E-33 HE689758
2.E-28 HE702063
8.E-32 HE707507
8.E-18 HE711090
3.E-11 HE711327
H2A7 contig39260_829_1351 2.E-64 Acropora formosa P35061.2 243.15 204.85 0.790 0.899 0.740 1.000 - - -
H2A8 contig87961_4_298 3.E-51 Gallus gallus XP_003642635.1 8.38 30.09 0.064 0.285 0.360 1.000 2 5.E-46 HE693848
1.E-16 HE714998
H2A9 contig94637_39_541 3.E-65 Xenopus laevis NP_001086775.1 4.29 47.78 0.001 0.012 0.070 1.000 1 2.E-56 HE711680
H2A10 contig09212_1061-1926 8.E-26 Mustela putorius furo AER99544.1 18.87 12.97 0.569 0.778 0.421 1.000 - - -
H2A11 contig19788_3764-5623 7.E-38 Oreochromis niloticus XP_003451495.1 21.08 25.43 0.810 0.909 0.624 1.000 - - -
H2AZ1 contig14214_0-584 8.E-56 Cavia porcellus XP_003462309.1 16.17 27.45 0.398 0.671 0.740 1.000 - - -
H2AZ2 contig21808_7858_8553 1.E-54 Ascaris suum ADY40521.1 238.30 216.52 0.886 0.945 0.932 1.000 - - -
  1. No Test = expression values did not meet threshold required for significance testing.