Table 2 Small indels in the clone CHA genome compared to the PAO1 genome
From: Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB
Indel-pos.a | Change | Locus_tag | Annotation | Indel known |
|---|---|---|---|---|
288750 | -AT | PA0257 | put. integrase/transposase, first ORF of RGP2 | no |
740420 | +C | PA0683 | HxcY, type II secretion system protein | yes1 |
995238 | +T | PA0912 | Hypothetical protein | yes1 |
1060785 | +T | PA0977 | Hypothetical, phage-like, first ORF in RGP7 | no |
1116214 | +C | PA1029 | Hypothetical protein, homology to antitoxin | yes1 |
1697856 | +G | PA1559 | Hypothetical, part of PmrA regulated operon | yes2 |
1835046 | +C | PA1685 | MasA, enolase-phosphatase E-1, part of methionine salvage pathway | yes2 |
2301796 | -GGC | PA2091 | Hypothetical protein | yes3 |
2355772 | +G | PA2139 | Hypothetical protein | yes2 |
2356683 | -C | PA2141 | Hypothetical protein | yes2 |
2533912 | +GTC | PA2302 | AmbE, non-ribosomal peptide synthetase | yes3 |
2753523 | +C | PA2452 | Similar to enterobactin esterase | yes2 |
3083197 | +G | PA2727 | Similar DNA helicase | yes2 |
3506327 | -C | PA3124 | Transcriptional regulator; deletion in last codon | no |
3873151 | -CCC | PA3462 | Sensor kinase of two-component system | yes1 |
4657418 | -A | PA4161 | FepG, ferric enterobactin transport protein; last codon, no change of coding sequence | yes4 |
4888195 | +G | PA4360 | Hypothetical, chromosome segregation protein, SMC-like; disruption of start codon | yes5 |
5515497 | -A | PA4915 | Chemotaxis transducer | no |
5945963 | +C | PA5282 | Major facilitator transporter | no |