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Table 1 Summary of the results of the Markov models for selected codons

From: Ambushing the ambush hypothesis: predicting and evaluating off-frame codon frequencies in Prokaryotic Genomes

Algorithm 2-3 Markov model 5-3 Markov model
Codons % organisms with excessa Average log ratio Correlation value R value % organisms with excessa Average log ratio Correlation value R value
TGG 96 0.0011 0.003 0.58 96 0.0011 0.003 0.51
TGC 93 0.0009 0.002 0.45 93 0.0009 0.002 0.45
TGT 90 0.0008 0.002 0.31 90 0.0008 0.002 0.29
TGA 94 0.0008 0.002 0.46 93 0.0008 0.002 0.40
TAG 38 -0.0009 -0.009 -0.58 39 -0.0011 -0.012 -0.62
TAA 47 -0.0005 -0.007 -0.50 44 -0.0008 -0.010 -0.61
All Stop Codons 85 0.0005 0.001 0.31 83 0.0004 0.001 0.20
  1. a Percent of the 1,976 organisms tested with excess of the codon off-frame.