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Table 2 Genomic features of the Novosphingobium strains

From: Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation

Feature Strain within the Novosphingobiumgroup
Y88 US6-1 Rr 2-17 AP12 DSM 12444 PP1Y
Chromosome size (bps) 4,148,048 5,344,974 4,539,029 5,611,617 4,233,314 5,313,905
Plasmid size(s) (bps) n.d n.d n.d n.d 184,462 and 487,268 1,161,602, 192,103 and 48,714
GC% 63.95 63.07 62.71 65.91 65.11 63.26
N50 192,509 117,882 130,074 54,713 n.r n.r
CDS       
Total 3,801 5,234 4,302 5,214 3,937 4,664
# GO assigned (%) 2,733 (72) 3,330 (64) 2,874 (67) 3,489 (67) 2,805 (71) 3,376 (72)
# EC assigned (%) 989 (26) 1,193 (23) 827 (19) 913 (18) 1,089 (28) 1,339 (29)
# IPR assigned (%) 3,273 (86) 4,155 (79) 3,543 (82) 4,400 (84) 3,435 (87) 4,162 (89)
Calculated median pI of total proteome 6.18 5.86 6.17 5.89 5.98 5.79
tRNAs 49 46 47 45 57 58
# Scaffolds 19 n.r n.r n.r n.r n.r
# Contigs 77 123 166 187 n.r n.r
  1. Abbreviations: GO Gene ontology, EC Enzyme code, IPR Interproscan, CDS coding domain sequence, n.r not relevant, n.d not yet determined.