Table 2 Genomic features of the Novosphingobium strains
Feature | Strain within the Novosphingobiumgroup | |||||
|---|---|---|---|---|---|---|
Y88 | US6-1 | Rr 2-17 | AP12 | DSM 12444 | PP1Y | |
Chromosome size (bps) | 4,148,048 | 5,344,974 | 4,539,029 | 5,611,617 | 4,233,314 | 5,313,905 |
Plasmid size(s) (bps) | n.d | n.d | n.d | n.d | 184,462 and 487,268 | 1,161,602, 192,103 and 48,714 |
GC% | 63.95 | 63.07 | 62.71 | 65.91 | 65.11 | 63.26 |
N50 | 192,509 | 117,882 | 130,074 | 54,713 | n.r | n.r |
CDS | Â | Â | Â | Â | Â | Â |
Total | 3,801 | 5,234 | 4,302 | 5,214 | 3,937 | 4,664 |
# GO assigned (%) | 2,733 (72) | 3,330 (64) | 2,874 (67) | 3,489 (67) | 2,805 (71) | 3,376 (72) |
# EC assigned (%) | 989 (26) | 1,193 (23) | 827 (19) | 913 (18) | 1,089 (28) | 1,339 (29) |
# IPR assigned (%) | 3,273 (86) | 4,155 (79) | 3,543 (82) | 4,400 (84) | 3,435 (87) | 4,162 (89) |
Calculated median pI of total proteome | 6.18 | 5.86 | 6.17 | 5.89 | 5.98 | 5.79 |
tRNAs | 49 | 46 | 47 | 45 | 57 | 58 |
# Scaffolds | 19 | n.r | n.r | n.r | n.r | n.r |
# Contigs | 77 | 123 | 166 | 187 | n.r | n.r |