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Table 2 Densities of repetitive element families in pig CNVRs and SDs

From: Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

Repeats

PigCNVRs1

PigSDs2

Other intervals3

Number of 10 Kb intervals

5304

2467

259660

LINE-L1

2872.95*

2852.95*

1368.88

LINE-L2

259.06

241.895

263.975

SINE-tRNA-Glu

1132.72

1133.05

1049.36

LTR-ERV1

248.19*

438.18*

148.055

LTR-ERVL-MaLR

170.467

183.131

159.755

SINE-MIR

193.498

209.735

233.435

DNA-hAT-Charlie

106.889

136.9616

111.46

Satellite

638.778*

576.016*

273.754

  1. 1Flanking 10 Kb regions of both end of CNVRs, all overlapping regions are merged.
  2. 2Flanking 10 Kb regions of SDs, all overlapping regions are merged.
  3. 3Whole genome is divided into 10 Kb regions.
  4. *p-value (<0.001).