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Table 2 Densities of repetitive element families in pig CNVRs and SDs

From: Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

Repeats PigCNVRs1 PigSDs2 Other intervals3
Number of 10 Kb intervals 5304 2467 259660
LINE-L1 2872.95* 2852.95* 1368.88
LINE-L2 259.06 241.895 263.975
SINE-tRNA-Glu 1132.72 1133.05 1049.36
LTR-ERV1 248.19* 438.18* 148.055
LTR-ERVL-MaLR 170.467 183.131 159.755
SINE-MIR 193.498 209.735 233.435
DNA-hAT-Charlie 106.889 136.9616 111.46
Satellite 638.778* 576.016* 273.754
  1. 1Flanking 10 Kb regions of both end of CNVRs, all overlapping regions are merged.
  2. 2Flanking 10 Kb regions of SDs, all overlapping regions are merged.
  3. 3Whole genome is divided into 10 Kb regions.
  4. *p-value (<0.001).