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Table 5 Functional annotation clustering of down-regulated genes by DAVID

From: Transcriptome analysis of porcine M. semimembranosus divergent in intramuscular fat as a consequence of dietary protein restriction

Annotation Cluster 1-

Count

P-value+

Genes

Enrichment Score: 2.63

   

GO:0051301 ~ cell division

18

3.317E-05

KIAA0892, NEK2, NUSAP1, CECR2, BIRC5, RACGAP1, MCM5, CDK2, SMC4, CCNB1, CCNE1, MAD2L1, NSL1, CKS2, BUB1, CHFR, ASPM, SPAST

GO:0000280 ~ nuclear division

13

0.0008

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, CDK2, SMC4, CCNB1, MAD2L1, NSL1, BUB1, CHFR, ASPM

GO:0007067 ~ mitosis

13

0.0008

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, CDK2, SMC4, CCNB1, MAD2L1, NSL1, BUB1, CHFR, ASPM

GO:0000087 ~ M phase of mitotic cell cycle

13

0.0009

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, CDK2, SMC4, CCNB1, MAD2L1, NSL1, BUB1, CHFR, ASPM

GO:0048285 ~ organelle fission

13

0.001

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, CDK2, SMC4, CCNB1, MAD2L1, NSL1, BUB1, CHFR, ASPM

GO:0000279 ~ M phase

16

0.001

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, PIM2, CDK2, SMC4, RPA1, CCNB1, MAD2L1, NSL1, CKS2, BUB1, CHFR, ASPM

GO:0007049 ~ cell cycle

27

0.002

CLSPN, NEK2, AURKA, SESN1, RPA1, CCNE1, BUB1, ASPM, KIAA0892, NUSAP1, BIRC5, PIM2, GAS1, RACGAP1, CDK2, SMC4, CCNB1, MAD2L1, NSL1, RASSF2, CKS2, G0S2, SIAH2, CHFR, CCNDBP1, SPAST, TP53INP1

GO:0007059 ~ chromosome segregation

7

0.004

KIAA0892, MAD2L1, NEK2, NSL1, NUSAP1, BIRC5, SMC4

GO:0022402 ~ cell cycle process

21

0.004

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, PIM2, GAS1, RACGAP1, SESN1, CDK2, SMC4, RPA1, CCNB1, CCNE1, MAD2L1, NSL1, CKS2, BUB1, CHFR, ASPM, TP53INP1

GO:0000070 ~ mitotic sister chromatid segregation

5

0.004

KIAA0892, MAD2L1, NEK2, NUSAP1, SMC4

GO:0022403 ~ cell cycle phase

17

0.004

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, PIM2, CDK2, SMC4, RPA1, CCNB1, CCNE1, MAD2L1, NSL1, CKS2, BUB1, CHFR, ASPM

GO:0000819 ~ sister chromatid segregation

5

0.005

KIAA0892, MAD2L1, NEK2, NUSAP1, SMC4

GO:0007346 ~ regulation of mitotic cell cycle

9

0.007

MAD2L1, HOXA13, NEK2, BUB1, NUSAP1, BIRC5, GAS1, CHFR, CDK2

GO:0000278 ~ mitotic cell cycle

14

0.020

KIAA0892, NEK2, NUSAP1, AURKA, BIRC5, CDK2, SMC4, CCNB1, CCNE1, MAD2L1, NSL1, BUB1, CHFR, ASPM

GO:0051726 ~ regulation of cell cycle

12

0.043

CCNB1, MAD2L1, HOXA13, TBX3, NEK2, BUB1, CKS2, NUSAP1, BIRC5, GAS1, CHFR, CDK2

Annotation Cluster 2- Enrichment Score: 1.66

Count

P -value

Genes

GO:0007346 ~ regulation of mitotic cell cycle

9

0.007

MAD2L1, HOXA13, NEK2, BUB1, NUSAP1, BIRC5, GAS1, CHFR, CDK2

GO:0010564 ~ regulation of cell cycle process

7

0.019

MAD2L1, HOXA13, NEK2, BUB1, NUSAP1, BIRC5, GAS1

GO:0007088 ~ regulation of mitosis

5

0.019

MAD2L1, HOXA13, NEK2, BUB1, NUSAP1

GO:0051783 ~ regulation of nuclear division

5

0.019

MAD2L1, HOXA13, NEK2, BUB1, NUSAP1

GO:0051726 ~ regulation of cell cycle

12

0.043

CCNB1, MAD2L1, HOXA13, TBX3, NEK2, BUB1, CKS2, NUSAP1, BIRC5, GAS1, CHFR, CDK2

GO:0033043 ~ regulation of organelle organization

9

0.048

CAV1, PLA2G4A, MAD2L1, HOXA13, NEK2, ELN, BUB1, NUSAP1, TMSB10

Annotation Cluster 3- Enrichment Score: 1.35

Count

P -value

Genes

GO:0010564 ~ regulation of cell cycle process

7

0.019

MAD2L1, HOXA13, NEK2, BUB1, NUSAP1, BIRC5, GAS1

GO:0031577 ~ spindle checkpoint

3

0.020

MAD2L1, BUB1, BIRC5

Annotation Cluster 4- Enrichment Score: 1.33

Count

P -value

Genes

GO:0043062 ~ extracellular structure organization

9

0.011

GJA10, NRXN3, FBLN5, ELN, COL3A1, NID1, DCN, COL5A3, GFOD2

GO:0030198 ~ extracellular matrix organization

7

0.012

FBLN5, ELN, COL3A1, NID1, DCN, COL5A3, GFOD2

GO:0007160 ~ cell-matrix adhesion

6

0.024

LYVE1, FBLN5, COL3A1, ITGB5, NID1, COL5A3

GO:0031589 ~ cell-substrate adhesion

6

0.035

LYVE1, FBLN5, COL3A1, ITGB5, NID1, COL5A3

  1. +P-value from modified Fisher exact score.