Table 1 Putative carotenoid hydroxylase genes identified in 18 algae genomes
Gene locations (Locations are indicated by positions on either chromosomes or scaffolds) | Protein length | Types |
|---|---|---|
Chlorophyta---- Chlamydomonas reinhardtii | ||
jgi|Chlre4|309780|kg.chromosome_8_#_293_#_ABQ59243.1 | 577 | CYP97C |
jgi|Chlre4|196742|DNE_DNE_gwH.55.10.1 | 652 | CYP97A |
jgi|Chlre4|196744|DNE_DNE_e_gwW.42.59.1 | 655 | CYP97A |
jgi|Chlre4|283001|au.g1522_t1 | 502 | CYP97B |
jgi|Chlre4|164400|fgenesh2_kg.C_scaffold_40000013 | 298 | BCH |
Chlorophyta---- Volvox carteri | ||
jgi|Volca1|83281|estExt_Genewise1Plus. C_520019 | 576 | CYP97C |
jgi|Volca1|100143|fgenesh4_pg.C_scaffold_106000021 | 672 | CYP97A |
jgi|Volca1|65884|e_gw1.51.4.1 | 642 | CYP97B |
jgi|Volca1|44641|gw1.75.40.1 | 294 | BCH |
Chlorophyta---- Chlorella NC64A | ||
jgi|ChlNC64A_1|51247|fgenesh3_pg. C_scaffold_6000061 | 578 | CYP97C |
jgi|ChlNC64A_1|138471|IGS.gm_20_00220 | 615 | CYP97B |
jgi|ChlNC64A_1|24463|e_gw1.13.95.1 | 238 | BCH |
Chlorophyta---- Chlorella vulgaris | ||
jgi|Chlvu1|60845|GG.C169_S07_00141 | 541 | CYP97C |
jgi|Chlvu1|24726|e_gw1.1.89.1 | 535 | CYP97A |
jgi|Chlvu1|26454|e_gw1.3.111.1 | 534 | CYP97B |
jgi|Chlvu1|44442|estExt_Genewise1Plus.C_160017 | 347 | BCH |
Chlorophyta---- Coccomyxa sp c-169 | ||
jgi|Coc_C169_1|63212|Genemark1.3995_g | 541 | CYP97C |
jgi|Coc_C169_1|52277|estExt_fgenesh1_pm.C_10317 | 432 | CYP97A |
jgi|Coc_C169_1|12656|e_gw1.3.115.1 | 534 | CYP97B |
jgi|Coc_C169_1|30875|estExt_Genewise1Plus.C_160317 | 347 | BCH |
Chlorophyta---- Ostreococcus lucimarinus | ||
jgi|Ost9901_3|33533|eugene.0900010237 | 545 | CYP97C |
jgi|Ost9901_3|47300|estExt_GenewiseEukaryote.C_Chr_130084 | 495 | CYP97A |
jgi|Ost9901_3|1824|gwEuk.21.62.1 | 461 | CYP97A |
jgi|Ost9901_3|29177|eugene.0100010571 | 564 | CYP97B |
jgi|Ost9901_3|18007|fgenesh1_pg.C_Chr_14000053 | 561 | CYP97B |
jgi|Ost9901_3|9013|gwEuk.10.453.1 | 153 | BCH |
Chlorophyta---- Osetrococcus tauri | ||
jgi|Ostta4|1830|gw1.09.00.100.1 | 490 | CYP97C |
jgi|Ostta4|23029|estExt_fgenesh1_pm.C_Chr_13.00010043 | 484 | CYP97A |
jgi|Ostta4|27418|estExt_gwp_GeneWisePlus.C_Chr_01.00010469 | 577 | CYP97B |
jgi|Ostta4|23060|estExt_fgenesh1_pm.C_Chr_15.00010014 | 485 | CYP97B |
jgi|Ostta4|18835|e_gw1.08.00.85.1 | 407 | OTHER |
jgi|Ostta4|5089|gw1.10.00.289.1 | 216 | BCH |
Chlorophyta---- Osetrococcus RCC809 | ||
jgi|OstRCC809_1|1644|gw1.3.120.1 | 490 | CYP97C |
jgi|OstRCC809_1|38666|fgenesh1_pg.C_scaffold_13000165 | 542 | CYP97A |
jgi|OstRCC809_1|53931|estExt_Genewise1.C_21287 | 525 | CYP97B |
jgi|OstRCC809_1|87721|eugene1.0000120100 | 576 | CYP97B |
jgi|OstRCC809_1|16226|gw1.3.1299.1 | 153 | BCH |
Chlorophyta---- Micromonas pusilla | Â | Â |
jgi|MicpuC2|32152 | 550 | CYP97C |
jgi|MicpuC2|26780 | 580 | CYP97A |
jgi|MicpuC2|22138 | 530 | CYP97B |
jgi|MicpuC2|57732 | 526 | OTHER |
jgi|MicpuC2|11104 | 230 | BCH |
Chlorophyta---- Micromonas sp. RCC299 | ||
jgi|MicpuN2|95887|estExt_Genewise2Plus.C_Chr_140254 | 542 | CYP97C |
jgi|MicpuN2|83128|e_gw2.06.152.1 | 525 | CYP97A |
jgi|MicpuN2|96121|estExt_Genewise2Plus.C_Chr_160324 | 539 | CYP97B |
jgi|MicpuN2|88940|e_gw2.16.55.1 | 574 | CYP97B |
jgi|MicpuN2|76186|gw2.07.573.1 | 232 | BCH |
Rhodophyta---- Cyanidioschyzon merolae | ||
gnl|CMER|CMV041C [pt] beta-carotene hydroxylase | 259 | CRTR |
Bacillariophyta---- Thalassiosira pseudonana | ||
jgi|Thaps3|36235|e_gw1.9.19.1 | 667 | CYP97B |
jgi|Thaps3|264039|thaps1_ua_kg.chr_13000087 | 547 | CYP97B |
Bacillariophyta---- Phaeodactylum tricornutum | ||
jgi|Phatr2|26422|estExt_Genewise1.C_chr_50056 | 770 | CYP97B |
jgi|Phatr2|16586|e_gw1.27.30.1 | 539 | CYP97B |
Bacillariophyta---- Fragilariopsis cylindrus | ||
jgi|Fracy1|169705|estExt_Genewise1.C_61231 | 528 | CYP97B |
jgi|Fracy1|170430|estExt_Genewise1.C_71165 | 614 | CYP97B |
Haptophyceae---- Emiliania huxleyi | ||
jgi|Emihu1|463287|estExtDG_fgeneshEH_pg.C_230139 | 618 | CYP97B |
Cryptophyta---- Guillardia theta | ||
jgi|Guith1|114743|au.78_g15845 | 582 | CYP97B |
jgi|Guith1|88554|estExt_Genewise1Plus.C_630014 | 492 | CYP97B |
jgi|Guith1|158065|fgenesh2_pm.48_#_5 | 499 | CYP97B |
Cercozoa---- Bigelowiella natans CCMP2755 | ||
jgi|Bigna1|39488|e_gw1.33.13.1 | 474 | CYP97C |
jgi|Bigna1|52980|estExt_Genewise1Plus.C_140020 | 545 | CYP97B |
Stramenopiles---- Aureococcus anophagefferens | ||
jgi|Auran1|19592 | 528 | CYP97B |
jgi|Auran1|34662 | 432 | CYP97B |