Table 3 Top 70 up-regulated contigs in fibrous roots compared to initiating storage roots
Contig | Length | ISR reads | FR reads | Fold change | Annotation |
|---|---|---|---|---|---|
S_PBL_c4848 | 510 | 0.9 | 546.3 | 607.0 | not annotated |
S_PBL_c22976 | 665 | 2.8 | 756.9 | 270.3 | XP_002327317.1 Predicted protein [Populus trichocarpa] |
S_PBL_lrc52198 | 626 | 0.9 | 228.8 | 254.2 | AAK27968.1 Cysteine protease [Ipomoea batatas] |
S_PBL_c1692 | 703 | 1* | 251.2 | 251.2 | not annotated |
S_PBL_c14075 | 626 | 1* | 232 | 232.0 | XP_001837463.1 Tubulin alpha chain [Coprinopsis cinerea okayama7#130] |
S_PBL_c36764 | 703 | 3.7 | 856.3 | 231.4 | XP_002303479.1 predicted protein [Populus trichocarpa] |
S_PBL_c1452 | 539 | 0.9 | 206.3 | 229.2 | AAK27968.1 Cysteine protease [Ipomoea batatas] |
S_PBL_c25084 | 735 | 1* | 209.5 | 209.5 | CAO14793.1 unnamed protein product [Vitis vinifera] |
S_PBL_c2976 | 600 | 26.2 | 5316.4 | 202.9 | Q40157.1 Metallothionein-like protein type 2 A |
S_PBL_lrc52159 | 665 | 0.9 | 174.3 | 193.7 | not annotated |
S_PBL_c43111 | 446 | 0.9 | 168.9 | 187.7 | not annotated |
S_PBL_c39992 | 480 | 1* | 187.1 | 187.1 | XP_001874004.1 predicted protein [Laccaria bicolor] |
S_PBL_c18994 | 719 | 20.6 | 3790.8 | 184.0 | not annotated |
S_PBL_c28403 | 834 | 0.9 | 164.6 | 182.9 | XP_001884841.1 Delta 9-fatty acid desaturase protein [Laccaria bicolor] |
S_PBL_c30965 | 742 | 0.9 | 153.9 | 171.0 | CAO23367.1 unnamed protein product [Vitis vinifera] |
S_PBL_c29652 | 772 | 0.9 | 151.8 | 168.7 | XP_002304020.1 predicted protein [Populus trichocarpa] |
S_PBL_c12455 | 525 | 34.6 | 5763.2 | 166.6 | Q40157.1 Metallothionein-like protein type 2 A |
S_PBL_c5087 | 783 | 2.8 | 465 | 166.1 | not annotated |
S_PBL_c18075 | 609 | 4.7 | 767.6 | 163.3 | not annotated |
S_PBL_c44512 | 388 | 0.9 | 145.4 | 161.6 | XP_002279608.1 hypothetical protein [Vitis vinifera] |
S_PBL_c19899 | 443 | 0.9 | 144.3 | 160.3 | not annotated |
S_PBL_c14724 | 532 | 1* | 156.1 | 156.1 | CAN80314.1 hypothetical protein [Vitis vinifera] |
S_PBL_c30195 | 672 | 0.9 | 136.8 | 152.0 | not annotated |
S_PBL_c8847 | 687 | 1* | 150.7 | 150.7 | XP_002330606.1 predicted protein [Populus trichocarpa] |
S_PBL_c6142 | 645 | 1.9 | 275.8 | 145.2 | XP_002263033 Peroxidase 10-like [Vitis vinifera] |
S_PBL_c11711 | 510 | 7.5 | 1082.9 | 144.4 | XP_001880208.1 Fumarate reductase [Laccaria bicolor] |
S_PBL_c35569 | 653 | 3.7 | 533.5 | 144.2 | not annotated |
S_PBL_c337 | 838 | 27.1 | 3771.6 | 139.2 | AAL79832.2 Osmotin-like protein [Solanum nigrum] |
S_PBL_c50215 | 567 | 1.9 | 261.9 | 137.8 | not annotated |
S_PBL_lrc32508 | 540 | 0.9 | 124 | 137.8 | not annotated |
S_PBL_c12800 | 554 | 1.9 | 260.8 | 137.3 | XP_001881080.1 Histone 2A [Laccaria bicolor] |
S_PBL_c13942 | 648 | 3.7 | 504.6 | 136.4 | XP_001888404.1 Sphingolipid C9-methyltransferase [Laccaria bicolor] |
S_PBL_c837 | 483 | 1.9 | 258.7 | 136.2 | not annotated |
S_PBL_c14357 | 689 | 3.7 | 488.6 | 132.1 | EAY93058.1 hypothetical protein OsI_14861 [Oryza sativa Indica Group] |
S_PBL_c44050 | 575 | 1.9 | 242.7 | 127.7 | XP_001834214.1 hypothetical protein CC1G_09714 [Coprinopsis cinerea okayama7#130] |
S_PBL_c47284 | 674 | 0.9 | 114.4 | 127.1 | EEF39207.1 Rhicadhesin receptor precursor, putative [Ricinus communis] |
S_PBL_c29183 | 616 | 0.9 | 113.3 | 125.9 | not annotated |
S_PBL_c15554 | 601 | 13.1 | 1644.2 | 125.5 | Q40157.1 Metallothionein-like protein type 2 A |
S_PBL_c28805 | 440 | 1* | 122.9 | 122.9 | CAO44491.1 unnamed protein product [Vitis vinifera] |
S_PBL_c9181 | 557 | 1.9 | 230.9 | 121.5 | AAY87888.1 Glutathione peroxidase [Taiwanofungus camphoratus] |
S_PBL_lrc53720 | 379 | 52.4 | 6313.8 | 120.5 | not annotated |
S_PBL_c18857 | 626 | 1* | 117.6 | 117.6 | AAK27968.1 Cysteine protease [Ipomoea batatas] |
S_PBL_c5350 | 526 | 1.9 | 221.3 | 116.5 | not annotated |
S_PBL_c41001 | 434 | 0.9 | 103.7 | 115.2 | XP_572855.1 Polysaccharide synthase [Cryptococcus neoformans] |
S_PBL_c17858 | 525 | 1* | 113.3 | 113.3 | not annotated |
S_PBL_c30000 | 488 | 0.9 | 101.6 | 112.9 | XP_001838960.1 hypothetical protein CC1G_05513 [Coprinopsis cinerea okayama7#130] |
S_PBL_c25576 | 582 | 0.9 | 100.5 | 111.7 | not annotated |
S_PBL_c6293 | 718 | 12.2 | 1345.9 | 110.3 | not annotated |
S_PBL_c37132 | 470 | 0.9 | 95.1 | 105.7 | not annotated |
S_PBL_c3863 | 605 | 1.9 | 198.8 | 104.6 | CAN80314.1 hypothetical protein [Vitis vinifera] |
S_PBL_c12972 | 545 | 15.9 | 1651.7 | 103.9 | AAL16409.1 Pathogenesis-related protein PR10a [Nicotiana tabacum] |
S_PBL_c2399 | 892 | 2.8 | 290.8 | 103.9 | CAO22665.1 unnamed protein product [Vitis vinifera] |
S_PBL_c7735 | 565 | 1.9 | 196.7 | 103.5 | NP_200248.1 Late embryogenesis abundant protein-related [Arabidopsis thaliana] |
S_PBL_c28770 | 429 | 1.9 | 195.6 | 102.9 | not annotated |
S_PBL_c33041 | 444 | 1.9 | 194.6 | 102.4 | not annotated |
S_PBL_c27326 | 782 | 6.5 | 664.9 | 102.3 | XP_001890326.1 GPA1 heterotrimeric G-protein alpha subunit [Laccaria bicolor] |
S_PBL_c18989 | 540 | 1.9 | 193.5 | 101.8 | AAK27968.1 Cysteine protease [Ipomoea batatas] |
S_PBL_c6361 | 637 | 8.4 | 855.2 | 101.8 | XP_001880208.1 Fumarate reductase [Laccaria bicolor] |
S_PBL_c15414 | 674 | 1* | 100.5 | 100.5 | AAL14199.1 Cysteine proteinase precursor [Ipomoea batatas] |
S_PBL_c15414 | 674 | 1* | 100.5 | 100.5 | AAL14199.1 Cysteine proteinase precursor [Ipomoea batatas] |
S_PBL_c18957 | 652 | 1.9 | 190.3 | 100.2 | not annotated |
S_PBL_c12342 | 570 | 1* | 98.4 | 98.4 | not annotated |
S_PBL_c10766 | 501 | 1* | 94.1 | 94.1 | not annotated |
S_PBL_c40440 | 403 | 1* | 94.1 | 94.1 | not annotated |
S_PBL_c11884 | 622 | 1* | 93 | 93 | XP_002273655.1 PREDICTED: hypothetical protein [Vitis vinifera] |
S_PBL_lrc28732 | 494 | 1* | 87.7 | 87.7 | not annotated |
S_PBL_c24730 | 463 | 1* | 86.6 | 86.6 | not annotated |
S_PBL_c32483 | 699 | 1* | 86.6 | 86.6 | not annotated |
S_PBL_c14615 | 660 | 1* | 84.5 | 84.5 | EEF31626.1 Kiwellin, putative [Ricinus communis] |
S_PBL_c28823 | 729 | 1* | 83.4 | 83.4 | XP_001831241.1 hypothetical protein CC1G_00788 [Coprinopsis cinerea okayama7#130] |