RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapaand their use for genome-wide linkage mapping and specific-region fine mapping

Table 1 Sequencing and assembly statistics of four different lines of B. rapa

	Chiifu	Tetra	YSPB-24	Candle
Total number of reads	84,458,126	117,128,230	145,049,468	154,228,832
Paired ends (after filtering low quality reads)	64,690,910	78,907,790	105,468,958	115,144,542
Number of contigs	44,972	38,220	40,422	69,636
Percentage of reads assembled	61.3	69.9	78.6	76.0
Maximum length of contigs (bp)	8,956	15,582	10,001	13,504
N50 contig length (bp)	515	1,030	1,094	719
Mean depth of the contigs	76.3	121.6	181.2	160.4

ISSN: 1471-2164