Table 1 Read coverages, SNP and INDEL summaries
From: Variant discovery in targeted resequencing using whole genome amplified DNA
Dataset | chr12 WGA | chr12 Genomic | Whole-exome WGA | Whole-exome Genomic |
|---|---|---|---|---|
SNPs | 4642 | 4592 | 29600 | 30316 |
dbSNP % | 98.4 | 98.6 | 98.6 | 98.6 |
TsTv overall | 2.42 | 2.41 | 2.83 | 2.82 |
TsTv novel | 1.47 | 1.48 | 1.81 | 1.89 |
TsTv known | 2.44 | 2.43 | 2.85 | 2.84 |
INDELs | 491 | 482 | 2197 | 2215 |
dbSNP % | 34.8 | 34.0 | 34.2 | 34.8 |