Table 2 List of the cancer datasets used for this study
Database reference | Reference (PMID) | Tumor type(s) | Cases analysed | Affymetrix U133 Platform(s) | Graph size (nodes) | Graph size (edges) |
|---|---|---|---|---|---|---|
GSE11318 | Lenz et al. (18765795) | DLBCL | 194 | Plus 2.0 | 19,850 | 614,273 |
GSE1456 | Pawitan et al. (16280042) | Breast carcinoma | 134 | A & B | 19,246 | 559,761 |
GSE9891 | Tothill et al. (18698038) | Ovarian (epithelial) carcinoma | 265 | Plus 2.0 | 19,415 | 268,471 |
GSE3218 | Korkola et al. (16424014) | Testicular germ cell tumours | 86 | A & B | 18,934 | 954,082 |
GSE13294 | Jorissen et al. (19088021) | Colorectal carcinoma | 150 | Plus 2.0 | 22,687 | 725,467 |
caArray/rembr-00037 | REMBRANT – Repository for Molecular Brain Neoplasia Data | Primary CNS tumours | 253 | Plus 2.0 | 23,015 | 623,591 |
GSE7553 | Riker et al. (18442402) | Skin tumours | 77 | A & B | 19,623 | 600,143 |
GSE17920 | Steidl et al. (20220182) | Hodgkin lymphoma | 131 | Plus 2.0 | 13,846 | 521,593 |
GSE15459 | Ooi et al. (19798449) | Gastric cancer | 200 | Plus 2.0 | 15,747 | 719,884 |