Revised HUGO term | Ensembl model or chromosome location | Current ensembl annotation (taegut3.2.4 ) | Implication for zebra finch genome | Explanation |
---|---|---|---|---|
2A - Corrections | ||||
KCNA6 | ENSTGUG00000011959 | Novel Pseudogene | KCNA6 is present | Model truncated due to gaps in genomic sequence |
KCNAB1 | ENSTGUG00000011253; ENSTGUG00000011240 | Novel Gene | KCNAB1 is present | ENSTGUG00000011253, which corresponds to the 3′ part of the gene, is incorrectly placed upstream of ENSTGUG00000011240, which represents the 5′ part of the same gene |
KCNAB2 allele$ | ENSTGUG00000013969 | Novel Gene | KCNAB2 has an allele. | Model maps to Chr Unknown and has high sequence identity to KCNAB2, so it is likely an allele |
KCNB2 | ENSTGUG00000011511 | Novel Pseudogene | KCNB2 is present | Model truncated due to gaps in genomic sequence |
KCND2 | ENSTGUG00000004681 | Novel Gene | KCND2 is present | ENSTGUG00000004681 and ENSTGUG00000004691 (Table 1) are different parts of KCND2. |
KCTD4 | ENSTGUG00000018368 | B5FX54_TAEGU | KCTD4 is present | Model truncated due to gaps in genomic sequence |
KCTD4 allele$ | ENSTGUG00000018204 | B5FX54_TAEGU | KCTD4 is present (ENSTGUG00000018368; see above) but not duplicated | Model maps to Chr Unknown and has high sequence identity to KCTD4, so it is likely an allele |
KCNJ3 | ENSTGUG00000012153 | Novel Gene | KCNJ3 is present; KCNJ3L is a duplication of KCNJ3. | Model not annotated |
KCNJ3L | ENSTGUG00000002970 | KCNJ3 | Duplication of KCNJ3 (ENSTGUG00000012153), absent in humans | See results text |
KCNJ12 | ENSTGUG00000007541 | Novel Pseudogene | KCNJ12 is present | Model truncated due to gaps in genomic sequence |
KCNK16L | ENSTGUG00000013021 | Novel Gene | Duplication of KCNK16 (no model), absent in humans. | See results text |
KCNQ1L | ENSTGUG00000012696 | Novel Gene | Duplication of KCNQ1 (ENSTGUG00000009167), absent in mammals | Model not annotated |
KCNQ4 | ENSTGUG00000017337 | Novel Gene | KCNQ4 is present | Model not annotated |
KCNS2 | ENSTGUG00000012021 | Novel Pseudogene | KCNS2 is present | Model truncated due to gaps in genomic sequence |
KCNV2L | ENSTGUG00000000100 | Novel Gene | Duplication of KCNV2 (ENSTGUG00000005377), absent in humans | See results text |
KCTD12L | ENSTGUG00000005525 | Novel Gene | Duplication of KCTD12 (ENSTGUG00000008750); absent in humans | See results text |
2B - Additions | ||||
KCNE1P | Chr1B_rand:70101-70314 | None | Pseudogene duplication of KCNE1 (ENSTGUG00000016311), unique to zebra finch | Gene truncated but no gaps, high quality sequence |
KCNJ5/9Â L | Chr24:252787-253805 | None | KCNJ5 or KCNJ9 duplicated, but absent in humans | Gene truncated due to gaps in genomic sequence |
KCNK16 | Chr3:29820700-29833238 | None | KCNK16 is present | Gene truncated due to gaps in genomic sequence |
KCTD18 | Chr7:22280633-22353729 | None | KCTD18 is present | Gene truncated due to gaps in genomic sequence |