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Table 1 Number of genes predicted in each annotation (aug – AUGUSTUS, gm – GeneMark-ES, gs1 – GENESEQER with Utricularia intermedia gs2 - GENESEQER with Pinguicula vulgaris , gw1 – GENEWISE with Mimulus guttatus, gw2 – GENEWISE with Arabidopsis thaliana , gw3 - GENEWISE with Solanum lycopersicum, gw4 – GENEWISE with all Uniprot proteins) and number of genes in final dataset

From: The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences

 

Genes predicted with each method

With length more than 50 a.a. and without frameshifts

Among all with links to proteomes

Genes selected in final dataset

With links to uniprot

aug

11991

11907

9766

1247

848

gm

17245

15590

12625

3675

2180

gs1

11904

11904

11121

1305

1218

gs2

11928

11928

11023

1348

1270

gw1

15122

14915

13761

3260

3129

gw2

14717

14465

13636

2108

2028

gw3

15098

14840

13860

2411

2303

gw4

13689

13324

13277

2401

2385

all

   

17755

15361