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Table 1 RNA-Seq reveals the differential expression of two transcription factors (TF) in germinating cotyledons

From: Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq

    

RPKM

    

Gene model (R)

S-1

S-2

S-3

S-4

S-5

S-6

S-7

Annotation

Glyma12g04380.1 (R1)

26.8

82.5

103

129

85.9

49.0

39.6

NAC Transcription Factor

Glyma12g04380.1 (R2)

73.8

91.8

102

99.1

71.3

27.2

31.8

NAC Transcription Factor

Glyma11g12170.1 (R1)

41.1

99.7

121

149

97.6

56.2

46.7

NAC Transcription Factor

Glyma11g12170.1 (R2)

90.9

111

124

111

88.7

32.7

37.2

NAC Transcription Factor

Glyma11g12180.1 (R1)

35.9

95.4

117

146

96.2

55.1

45.9

NAC Transcription Factor

Glyma11g12180.1 (R2)

87.1

108

122

108

86.0

33.2

37.8

NAC Transcription Factor

Glyma01g18780.1 (R1)

8.56

31.7

43.5

68.0

49.5

34.3

18.9

NAC Transcription Factor

Glyma01g18780.1 (R2)

22.1

39.3

41.5

57.3

41.4

20.3

21.4

NAC Transcription Factor

Glyma13g22620.1 (R1)

1.2

11.6

21.9

35.7

26.5

17.9

12.7

YABBY Transcription Factor

Glyma13g22620.1 (R2)

8.8

17.6

18.4

36.5

27.5

14.3

13.8

YABBY Transcription Factor

Glyma17g12200.1 (R1)

1.67

16.3

29.3

45.2

29.8

21.0

15.4

YABBY Transcription Factor

Glyma17g12200.1 (R2)

13.0

26.4

28.9

50.1

38.7

16.9

17.7

YABBY Transcription Factor

  1. R denotes replicates. There are two replicates (R1 and R2) for each developmental stage. S denotes Stage and there are 7 different developmental stages designated by S (1–7) which have been shown in Figure 1. Expression levels of transcripts are shown in RPKM (reads per kilobase of gene model per million mapped reads).
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BMC Genomics

ISSN: 1471-2164

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