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Table 4 Summary of output for ChIP-Seq data analysis using MACS

From: Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq

TF name

Detected peaks

Peaks in intergenic region

Peaks associated with gene model

NAC TF

8246

4743

3503

YABBY TF

18064

12430

5634

  1. Using Bowtie alignments for both control and experimental conditions were analyzed using MACS software to detect peaks for the potential binding sites. The genomic locations of these peaks were identified using a custom made Python programing script.