Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq

Table 5 Discovery of motifs by MEME and their matches to known JASPAR CORE plant transcription factor binding site database

TF Name	Motifs	Sequence	Matched to known motif
NAC	Motif1	G[AT]G[AG]G[AG]GA	Zinc Finger
	Motif2	C[AC]C[GA][TC][GA]CC	Leucine Zipper
	Motif3	TGGGCC	Leucine Zipper
YABBY	Motif1	CC[CA][TC]C[TA][CT]C	Zinc Finger
YABBY	Motif2	GA[AG]AGAAA	Zinc Finger
	Motif3	CCCCAC	AP2 MBD-like

Motifs: Short DNA sequences for TFs binding. These motifs were discovered by MEME software.
ChIP-Seq tags which fall in the promoter region have been identified. For promoter associated peaks, 250 bp sequences from both sides of peak summits have been retrieved. These 500 bp sequences for associated Glyma models were given as input in MEME software to identify common motifs.

ISSN: 1471-2164