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Table 2 CoBRA quantitated percent methylation across 17 mice and 21 IAP elements

From: Phylogenetic and DNA methylation analysis reveal novel regions of variable methylation in the mouse IAP class of transposons

  Red clade Green clade Black clade  
  CabpIAP IAP31 IAP44 IAP51 IAP77 IAP90 IAP110 IAP176 IAP182 IAP186 IAP195 IAP236 *IAP281Y IAP268 IAP506 IAP655 IAP1112 IAP1248 IAP1252 IAP1259 IAP1334 Average
Mouse 1 74 52 70 77 60 80 71 69 70 61 70 62   77 77 76 66 LOD 83 82 88 72
Mouse 2 77 60 77 75 60 71 72 60 71 68 76 68   84 86 70 69 83 77 78 86 73
Mouse 3 81 57 77 78 66 76 72 66 74 55 73 67   76 71 76 68 84 78 84 LOD 72
Mouse 4 72 61 80 77 65 68 69 56 77 56 54 65   73 82 70 60 89 80 81 86 71
Mouse 5 74 59 71 78 61 80 75 65 70 69 69 63   80 81 70 LOD 76 78 82 90 73
Mouse 6 76 57 78 74 65 73 71 63 64 67 76 58 64 77 94 76 63 78 LOD 85 86 72
Mouse 7 66 62 80 75 61 73 78 54 67 65 64 66   75 75 74 60 85 78 82 86 71
Mouse 8 76 60 75 78 62 72 64 63 71 65 73 60   78 93 70 62 81 79 84 LOD 72
Mouse 9 67 62 83 73 64 70 67 69 75 69 74 63 67 76 76 74 68 87 83 86 86 73
Mouse 10 82 62 80 47 68 69 57 57 78 73 65 58   82 92 79 60 84 82 81 91 72
Mouse 11 70 60 87 69 65 71 73 65 70 68 72 54 64 80 76 73 63 87 87 84 90 73
Mouse 12 48 61 77 70 66 71 57 63 74 71 76 64 61 84 94 75 64 81 82 81 89 72
Mouse 13 79 64 81 73 64 69 66 67 69 68 75 62 64 80 81 72 66 LOD 77 84 86 72
Mouse 14 79 58 79 72 68 76 57 63 69 68 78 71   79 82 77 69 84 84 84 90 74
Mouse 15 74 55 80 75 68 74 71 60 72 66 71 60   81 80 71 64 83 84 85 89 73
Mouse 16 73 56 81 71 70 69 48 60 83 71 75 67 57 83 74 73 66 82 79 85 88 72
Mouse 17 76 59 71 78 62 78 72 66 66 67 68 65 65 78 LOD 77 65 82 79 83 91 72
mean 73 59 78 73 64 73 67 63 72 66 71 63 63 79 82 74 65 83 81 83 88 72
median 74 60 79 75 65 72 71 63 71 68 73 63 64 79 81 74 65 83 80 84 88 72
stdev 8 3 4 7 3 4 8 4 5 5 6 4 3 3 8 3 3 3 3 2 2 1
min 48 52 70 47 60 68 48 54 64 55 54 54 57 73 71 70 60 76 77 78 86 71
max 82 64 87 78 70 80 78 69 83 73 78 71 67 84 94 79 69 89 87 86 91 74
range 34 12 17 31 10 12 30 15 19 18 25 18 11 11 24 9 10 13 10 8 5 3
  1. * IAP located on the Y chromosome, only measured in male animals.
  2. LOD = Limit of Detection.
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BMC Genomics

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