BMC Genomics

Table 2 CoBRA quantitated percent methylation across 17 mice and 21 IAP elements

From: Phylogenetic and DNA methylation analysis reveal novel regions of variable methylation in the mouse IAP class of transposons

	Red clade							Green clade							Black clade
	CabpIAP	IAP31	IAP44	IAP51	IAP77	IAP90	IAP110	IAP176	IAP182	IAP186	IAP195	IAP236	*IAP281Y	IAP268	IAP506	IAP655	IAP1112	IAP1248	IAP1252	IAP1259	IAP1334	Average
Mouse 1	74	52	70	77	60	80	71	69	70	61	70	62		77	77	76	66	LOD	83	82	88	72
Mouse 2	77	60	77	75	60	71	72	60	71	68	76	68		84	86	70	69	83	77	78	86	73
Mouse 3	81	57	77	78	66	76	72	66	74	55	73	67		76	71	76	68	84	78	84	LOD	72
Mouse 4	72	61	80	77	65	68	69	56	77	56	54	65		73	82	70	60	89	80	81	86	71
Mouse 5	74	59	71	78	61	80	75	65	70	69	69	63		80	81	70	LOD	76	78	82	90	73
Mouse 6	76	57	78	74	65	73	71	63	64	67	76	58	64	77	94	76	63	78	LOD	85	86	72
Mouse 7	66	62	80	75	61	73	78	54	67	65	64	66		75	75	74	60	85	78	82	86	71
Mouse 8	76	60	75	78	62	72	64	63	71	65	73	60		78	93	70	62	81	79	84	LOD	72
Mouse 9	67	62	83	73	64	70	67	69	75	69	74	63	67	76	76	74	68	87	83	86	86	73
Mouse 10	82	62	80	47	68	69	57	57	78	73	65	58		82	92	79	60	84	82	81	91	72
Mouse 11	70	60	87	69	65	71	73	65	70	68	72	54	64	80	76	73	63	87	87	84	90	73
Mouse 12	48	61	77	70	66	71	57	63	74	71	76	64	61	84	94	75	64	81	82	81	89	72
Mouse 13	79	64	81	73	64	69	66	67	69	68	75	62	64	80	81	72	66	LOD	77	84	86	72
Mouse 14	79	58	79	72	68	76	57	63	69	68	78	71		79	82	77	69	84	84	84	90	74
Mouse 15	74	55	80	75	68	74	71	60	72	66	71	60		81	80	71	64	83	84	85	89	73
Mouse 16	73	56	81	71	70	69	48	60	83	71	75	67	57	83	74	73	66	82	79	85	88	72
Mouse 17	76	59	71	78	62	78	72	66	66	67	68	65	65	78	LOD	77	65	82	79	83	91	72
mean	73	59	78	73	64	73	67	63	72	66	71	63	63	79	82	74	65	83	81	83	88	72
median	74	60	79	75	65	72	71	63	71	68	73	63	64	79	81	74	65	83	80	84	88	72
stdev	8	3	4	7	3	4	8	4	5	5	6	4	3	3	8	3	3	3	3	2	2	1
min	48	52	70	47	60	68	48	54	64	55	54	54	57	73	71	70	60	76	77	78	86	71
max	82	64	87	78	70	80	78	69	83	73	78	71	67	84	94	79	69	89	87	86	91	74
range	34	12	17	31	10	12	30	15	19	18	25	18	11	11	24	9	10	13	10	8	5	3

* IAP located on the Y chromosome, only measured in male animals.
LOD = Limit of Detection.

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ISSN: 1471-2164

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