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Table 1 Summary of samples sequenced for discovery of salmo salar miRNA genes

From: Discovery and characterization of miRNA genes in atlantic salmon (Salmo salar) by use of a deep sequencing approach

Tissue, gender

Sample Id

Conc ng/μl

#Total trimmed reads1

#Total size filtered reads2

#Unique reads3

Acc# NCBI SRA4

Liver ♀

1

772

1,446,902

1,101958

64593

SRR866573

Liver ♂

6

404

1,647,133

1,175579

75273

SRR866579

Spleen ♂

2

114

8,597,057

7,027915

295940

SRR866583

Spleen ♀

4

58

2,236,013

1,856468

89165

SRR866587

Kidney ♂

3

428

10,065,660

8,180104

243430

SRR866589

Head kidney ♀

7

521

7,375,957

4,687901

246444

SRR866590

Heart ♀

8

252

2,812,993

2,058117

118366

SRR866605

Brain ♂

10

324

6,331,448

4,770906

132558

SRR866611

Intestine ♂

11

946

12,428,822

9,849737

197094

SRR866612

White muscle ♂

12

495

5,972,384

2,788579

142444

SRR866613

Gills ♂

22

340

6,240,735

5,058051

132038

SRR866614

One day old individual

13

475

18,041,561

12,824661

172048

SRR866615

  1. 1Total number of quality filtered and adaptor trimmed reads in a sample.
  2. 2Total number of quality filtered and adaptor trimmed reads in size interval 17-30 nt in a sample.
  3. 3Number of unique reads in a sample.
  4. 4Accession number to sequencing data from each of the samples in NCBI SRA database.
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BMC Genomics

ISSN: 1471-2164

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