Strain name | # of Clusters | # of Coding sequences | Genome size (mb) | GC Content(%) | Clinical origin | Geographic origin | GenBank BioProject numbers | Reference |
---|---|---|---|---|---|---|---|---|
22.1-21 | 1967 | 2220 | 1.89 | 38.03 | Nasopharynx | Ann Arbor, MI | PRJNA54389 | [32] |
22.4-21 | 1957 | 1975 | 1.85 | 38.04 | Nasopharynx | Ann Arbor, MI | PRJNA16396 | [32] |
22.1-24 | 1973 | 1915 | 2.1 | 37.91 | Nasopharynx | Ann Arbor, MI | PRJNA29373 | [32] |
3655 | 1991 | 1951 | 1.88 | 38.02 | Blood | San Diego, CA | PRJNA54385 | [33] |
6P18H1 | 2015 | 1952 | 1.91 | 38.1 | COPD | Buffalo, NY | PRJNA55127 | |
7P49H1 | 1897 | 1801 | 1.83 | 37.85 | COPD | Buffalo, NY | PRJNA55129 | |
PITT AA | 2003 | 1973 | 1.88 | 38.12 | COME, tube replacement | Children's Hospital, Pittsburgh, PA | PRJNA54391 | [36] |
PITT BB | 1922 | 1892 | 1.83 | 37.99 | COME, tube replacement | Children's Hospital, Pittsburgh, PA | PRJNA16402 | CGS |
PITT CC | 1915 | 1892 | 1.82 | 37.98 | COME, tube replacement | Children's Hospital, Pittsburgh, PA | PRJNA18099 | CGS |
PITT DD | 1865 | 2900 | 1.78 | 37.89 | COME, tube replacement | Children's Hospital, Pittsburgh, PA | PRJNA16392 | CGS |
PITT EE | 1848 | 1870 | 1.81 | 38.04 | COME, tube replacement | Children's Hospital, Pittsburgh, PA | PRJNA58591 | [36] |
PITT GG | 1966 | 2097 | 1.89 | 38.01 | AOM, ottorhea | Children's Hospital, Pittsburgh, PA | PRJNA58593 | [36] |
PITT HH | 1948 | 1968 | 1.84 | 38.00 | COME, tube replacement | Children's Hospital, Pittsburgh, PA | PRJNA54393 | [36] |
PITT II | 2057 | 2038 | 1.95 | 38.01 | AOM, ottorhea | Children's Hospital, Pittsburgh, PA | PRJNA54395 | [36] |
PITT JJ | 2054 | 2293 | 1.97 | 38.03 | COME, tube replacement | Children's Hospital, Pittsburgh, PA | PRJNA18103 | CGS |
NML20 | 1838 | 1757 | 1.78 | 37.91 | Blood | Manitoba, Canada | PRJNA29375 | CGS |
R1838 | 1900 | 1813 | 1.82 | 38.01 | Blood | Papua New Guinea | PRJNA29377 | CGS |
R3021 | 2017 | 1977 | 1.88 | 37.96 | Nasopharynx | Seattle, WA | PRJNA54397 | [29] |
R393 | 2109 | 2175 | 2 | 38.15 | Sputum isolate | Malaysia | PRJNA29379 | CGS |
86-028NP | 2001 | 1925 | 1.91 | 38.15 | Nasopharynx | Nationwide Childrens Hospital, Columbus, OH | PRJNA58093 | [30] |
B10810 | 2044 | 2007 | 1.98 | 38.1 | Meningitis | United Kingdom | PRJNA86647 | Sanger |
R2846 | 1856 | 1803 | 1.82 | 38.02 | OME | Seattle, WA | PRJNA191921 | [29] |
R2866 | 2017 | 1929 | 1.93 | 38.08 | Blood | Seattle, WA | PRJNA161923 | [29] |
RD KW20 | 1892 | 1874 | 1.83 | 38.15 | Laboratory Strain | Columbia University | PRJNA57771 | [28] |
Avg | 1960.5 | 1999.875 | 1.8825 | 38.02 | n/a | n/a | n/a | n/a |