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Table 1 H. influenzae strains used in design of CGH array

From: Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates

Strain name

# of Clusters

# of Coding sequences

Genome size (mb)

GC Content(%)

Clinical origin

Geographic origin

GenBank BioProject numbers

Reference

22.1-21

1967

2220

1.89

38.03

Nasopharynx

Ann Arbor, MI

PRJNA54389

[32]

22.4-21

1957

1975

1.85

38.04

Nasopharynx

Ann Arbor, MI

PRJNA16396

[32]

22.1-24

1973

1915

2.1

37.91

Nasopharynx

Ann Arbor, MI

PRJNA29373

[32]

3655

1991

1951

1.88

38.02

Blood

San Diego, CA

PRJNA54385

[33]

6P18H1

2015

1952

1.91

38.1

COPD

Buffalo, NY

PRJNA55127

[34, 35]

7P49H1

1897

1801

1.83

37.85

COPD

Buffalo, NY

PRJNA55129

[34, 35]

PITT AA

2003

1973

1.88

38.12

COME, tube replacement

Children's Hospital, Pittsburgh, PA

PRJNA54391

[36]

PITT BB

1922

1892

1.83

37.99

COME, tube replacement

Children's Hospital, Pittsburgh, PA

PRJNA16402

CGS

PITT CC

1915

1892

1.82

37.98

COME, tube replacement

Children's Hospital, Pittsburgh, PA

PRJNA18099

CGS

PITT DD

1865

2900

1.78

37.89

COME, tube replacement

Children's Hospital, Pittsburgh, PA

PRJNA16392

CGS

PITT EE

1848

1870

1.81

38.04

COME, tube replacement

Children's Hospital, Pittsburgh, PA

PRJNA58591

[36]

PITT GG

1966

2097

1.89

38.01

AOM, ottorhea

Children's Hospital, Pittsburgh, PA

PRJNA58593

[36]

PITT HH

1948

1968

1.84

38.00

COME, tube replacement

Children's Hospital, Pittsburgh, PA

PRJNA54393

[36]

PITT II

2057

2038

1.95

38.01

AOM, ottorhea

Children's Hospital, Pittsburgh, PA

PRJNA54395

[36]

PITT JJ

2054

2293

1.97

38.03

COME, tube replacement

Children's Hospital, Pittsburgh, PA

PRJNA18103

CGS

NML20

1838

1757

1.78

37.91

Blood

Manitoba, Canada

PRJNA29375

CGS

R1838

1900

1813

1.82

38.01

Blood

Papua New Guinea

PRJNA29377

CGS

R3021

2017

1977

1.88

37.96

Nasopharynx

Seattle, WA

PRJNA54397

[29]

R393

2109

2175

2

38.15

Sputum isolate

Malaysia

PRJNA29379

CGS

86-028NP

2001

1925

1.91

38.15

Nasopharynx

Nationwide Childrens Hospital, Columbus, OH

PRJNA58093

[30]

B10810

2044

2007

1.98

38.1

Meningitis

United Kingdom

PRJNA86647

Sanger

R2846

1856

1803

1.82

38.02

OME

Seattle, WA

PRJNA191921

[29]

R2866

2017

1929

1.93

38.08

Blood

Seattle, WA

PRJNA161923

[29]

RD KW20

1892

1874

1.83

38.15

Laboratory Strain

Columbia University

PRJNA57771

[28]

Avg

1960.5

1999.875

1.8825

38.02

n/a

n/a

n/a

n/a