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Table 4 Comparison of SGH to Whole Genome Sequencing

From: Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates

Strain No of clusters based on supragenome analysis Clusters represented on chip Number in agreement between WGS and CGH False negatives (CGH -, WGS +) [%] False positives (CGH +, WGS -)[%]
PittAA 2003 1849 1803 46 [2.49%] 46 [2.49%]
NML20 1838 1688 1665 23 [1.36%] 11 [0.65%]
22.1-21 1967 1811 1786 25 [1.38%] 14 [0.77%]
HI7P49HI 1897 1744 1724 20 [1.15%] 16 [0.92%]
R2846 1856 1708 1686 22 [1.29%] 20 [1.17%]
R2866 2017 1860 1837 23 [1.24%] 13 [0.70%]
R1838 1900 1748 1728 20 [1.14%] 15 [0.86%]
CZ4126-02   1702* 1656 46 [2.7%] 39 [2.29%]
  1. * based on WGS of CZ4126-02, and not included in SGHChip design.