Table 1 Chromosomal enrichment of CNVs detected by three different algorithms
Chromosome | CNVPartition (%) | PennCNV (%) | QuantiSNP (%) |
|---|---|---|---|
1 | 2.1 | 4.3 | 18.5 |
2 | 0.6 | 7.6 | 31.0 |
3 | 0.5 | 3.6 | 29.1 |
4 | 0.8 | 4.7 | 20.7 |
5 | 0.5 | 4.2 | 18.6 |
6 | 1.8 | 4.2 | 22.0 |
7 | 0.9 | 6.6 | 19.4 |
8 | 0.5 | 3.9 | 15.1 |
9 | 1.2 | 4.7 | 15.1 |
10 | 1.3 | 7.1 | 26.3 |
11 | 2.5 | 4.0 | 25.9 |
12 | 8.6 | 15.7 | 54.7 |
13 | 1.4 | 91.8 | 36.3 |
14 | 0.3 | 3.6 | 19.9 |
15 | 0.9 | 4.7 | 10.2 |
16 | 0 | 2.1 | 10.2 |
17 | 1.7 | 7.7 | 21.3 |
18 | 1.5 | 5.3 | 14.1 |
19 | 0 | 3.6 | 3.1 |
20 | 2.3 | 2.7 | 5.2 |
21 | 0 | 4.4 | 19.1 |
22 | 0 | 3.0 | 28.6 |
23 | 26.4 | 2.9 | 15.0 |
24 | 1.0 | 2.5 | 4.9 |
25 | 3.6 | 6.2 | 22.5 |
26 | 0 | 3.0 | 11.0 |
27 | 0 | 79.1 | 90.9 |
28 | 0.4 | 70.7 | 65.4 |
29 | 1.4 | 1.5 | 8.6 |
30 | 3.6 | 4.3 | 36.8 |
31 | 0 | 4.1 | 3.9 |
Total coverage | 1.7 | 9.0 | 22.0 |