Table 5 Number of CNVs derived from the 50 calls of all three detection algorithms that overlap among different breeds

Han

Old

8

Wes

7

4

Hol

8

1

1

Bran

1

1

0

0

RPon

1

1

1

1

0

Trak

3

1

1

1

0

1

TB-H

4

0

2

0

0

0

1

AV

12

6

4

2

1

1

1

0

Lus

10

5

3

2

1

1

2

1

6

Mar

10

4

3

3

1

1

1

1

5

8

RDK

3

2

2

2

0

1

1

0

1

2

2

RHD

4

3

4

1

0

1

1

1

3

1

2

1