Skip to main content

Table 7 Genome-wide associated CNVs for body size in horses

From: Analysis of copy number variants by three detection algorithms and their association with body size in horses

ECA Start End Genome-wide (chromosome-wide) P value PennCNV Genome-wide (chromosome-wide) P value QuantiSNP Genome-wide (chromosome-wide) P value CNVPartition Genome-wide (chromosome-wide) P value intersection of three detection programs Copy number Number of animals
1 156,012,982 156,870,455 0.006 (0.001)     1 111
1 156,657882 156,870,455   0.010 (0.003)    1 80
1 156,657,882 156,818,876     0.057 (0.018) 1 132
8 4,430,473 4,430,473 0.001 (0.001)    0.081 (0.023) 1 12/61
8 4,579,478 4,621,044   0.0002 (0.0002)    1 33
9 29,889,627 29,892,897   0.006 (0.001)    0, 1 37
  1. The chromosome-wide (EMP1; in brackets) and genome-wide corrected significant P-values (EMP2) of the associated CNV regions detected by PLINK for the different algorithms and the number of animals showing a CNV in this region are given. For the intersection of three detection programs the P-value at the threshold of significance is displayed. CNVPartition did not show any significant association.