Table 3 Statistical enrichment analysis for KEGG metabolic pathways ( p ≤0.05)
Pathway ID | Pathway | Genes with pathway annotation | p value | ||
|---|---|---|---|---|---|
| Â | Â | All genes | DEGs | Â | |
| Â | Â | Â | Up | Down | Â |
ko01100 | Metabolic pathways | 5905 (21.49%) | 607 | 2004 | 9.37E-18 |
ko01110 | Biosynthesis of secondary metabolites | 2821 (10.27%) | 322 | 989 | 4.54E-16 |
Carbohydrate metabolism | |||||
ko00040 | Pentose and glucuronate interconversions | 233 (0.85%) | 31 | 130 | 3.28E-20 |
ko00500 | Starch and sucrose metabolism | 651 (2.37%) | 72 | 257 | 3.70E-09 |
ko00053 | Ascorbate and aldarate metabolism | 208 (0.76%) | 21 | 80 | 0.004397 |
ko00010 | Glycolysis / Gluconeogenesis | 337 (1.23%) | 31 | 119 | 0.03086 |
ko00660 | C5-Branched dibasic acid metabolism | 11 (0.04%) | 5 | 3 | 0.026546 |
ko00620 | Pyruvate metabolism | 247 (0.9%) | 20 | 94 | 0.017667 |
Amino acid metabolism | |||||
ko00360 | Phenylalanine metabolism | 214 (0.78%) | 23 | 92 | 1.42E-05 |
ko00270 | Cysteine and methionine metabolism | 225 (0.82%) | 34 | 78 | 0.000967 |
ko00250 | Alanine, aspartate and glutamate metabolism | 171 (0.62%) | 21 | 63 | 0.006038 |
ko00300 | Lysine biosynthesis | 39 (0.14%) | 5 | 21 | 0.000519 |
ko00290 | Valine, leucine and isoleucine biosynthesis | 90 (0.33%) | 16 | 33 | 0.00268 |
ko00380 | Tryptophan metabolism | 116 (0.42%) | 19 | 42 | 0.002663 |
ko00260 | Glycine, serine and threonine metabolism | 139 (0.51%) | 16 | 52 | 0.013956 |
ko00330 | Arginine and proline metabolism | 167 (0.61%) | 25 | 52 | 0.045321 |
Metabolism of other amino acids | |||||
ko00460 | Cyanoamino acid metabolism | 167 (0.61%) | 23 | 71 | 7.09E-06 |
Biosynthesis of other secondary metabolites | |||||
ko00940 | Phenylpropanoid biosynthesis | 483 (1.76%) | 57 | 201 | 2.29E-10 |
ko00941 | Flavonoid biosynthesis | 272 (0.99%) | 29 | 124 | 1.24E-08 |
ko00945 | Stilbenoid, diarylheptanoid and gingerol biosynthesis | 241 (0.88%) | 39 | 96 | 1.20E-07 |
ko00944 | Flavone and flavonol biosynthesis | 78 (0.28%) | 8 | 37 | 0.000808 |
ko00966 | Glucosinolate biosynthesis | 40 (0.15%) | 11 | 16 | 0.000298 |
ko00402 | Benzoxazinoid biosynthesis | 43 (0.16%) | 3 | 24 | 0.001612 |
ko00950 | Isoquinoline alkaloid biosynthesis | 40 (0.15%) | 5 | 18 | 0.015469 |
Energy metabolism | |||||
ko00195 | Photosynthesis | 113 (0.41%) | 4 | 72 | 1.86E-09 |
Lipid metabolism | |||||
ko00592 | alpha-Linolenic acid metabolism | 156 (0.57%) | 20 | 67 | 2.46E-05 |
ko01040 | Biosynthesis of unsaturated fatty acids | 94 (0.34%) | 9 | 44 | 0.000624 |
ko00565 | Ether lipid metabolism | 675 (2.46%) | 83 | 215 | 0.006119 |
ko00062 | Fatty acid elongation | 6 (0.02%) | 2 | 4 | 0.003736 |
ko00564 | Glycerophospholipid metabolism | 866 (3.15%) | 110 | 273 | 0.001839 |
ko00100 | Steroid biosynthesis | 80 (0.29%) | 9 | 31 | 0.034756 |
ko00591 | Linoleic acid metabolism | 76 (0.28%) | 5 | 35 | 0.013071 |
ko00071 | Fatty acid metabolism | 136 (0.49%) | 11 | 56 | 0.012113 |
Metabolism of cofactors and vitamins | |||||
ko00785 | Lipoic acid metabolism | 11 (0.04%) | 0 | 9 | 0.005247 |
ko00770 | Pantothenate and CoA biosynthesis | 79 (0.29%) | Â | Â | 0.045586 |
Metabolism of terpenoids and polyketides | |||||
ko00904 | Diterpenoid biosynthesis | 98 (0.36%) | 10 | 55 | 6.17E-08 |
ko00903 | Limonene and pinene degradation | 205 (0.75%) | 33 | 83 | 4.46E-07 |
ko00906 | Carotenoid biosynthesis | 195 (0.71%) | 25 | 85 | 1.07E-06 |
ko00908 | Zeatin biosynthesis | 312 (1.14%) | 41 | 113 | 0.000209 |
ko00902 | Monoterpenoid biosynthesis | 30 (0.11%) | 13 | 26 | 0.01791 |
Glycan Biosynthesis and Metabolism | |||||
ko00531 | Glycosaminoglycan degradation | 86 (0.31%) | 5 | 39 | 0.017583 |
Immune system | |||||
ko04650 | Natural killer cell mediated cytotoxicity | 123 (0.45%) | 23 | 42 | 0.00168 |
Signal Transduction | |||||
ko04075 | Plant hormone signal transduction | 1667 (6.07%) | 185 | 614 | 1.87E-13 |
Environmental Adaptation | |||||
ko04626 | Plant-pathogen interaction | 1719 (6.26%) | 139 | 693 | 3.34E-15 |