Table 3 A. carolinensis genes that are unique to the ASU annotation and have vertebrate orthologues
Gene | ASU |
|---|---|
Annotated genes | 2,928 |
Annotated transcript isoforms | 3,612 |
Annotated isoforms/gene | 1.23 |
Transcript | |
All transcript isoforms | 3,612 |
Transcripts with start & stop codons | 2,698 |
Transcripts missing start or stop codon | 914 |
Single exon transcripts | 301 |
Transcript N50 length | 2,157 |
Average coding sequence length | 1,182 |
Exon | |
Total number of exons | 18,921 |
Exons with start with codon | 2,468 |
Exons without start or stop codon | 13,901 |
Exons with stop codon | 2,300 |
Exons/annotated transcript | 6.35 |
Average exon length | 188 |
Total exon length | 3,569,265 |
3' UTR | |
Total transcripts with 3'UTR | 1,323 |
Average length of transcripts with 3'UTR | 761.2 |
Total 3'UTR sequence length | 1,007,040 |
5' UTR | |
Total transcripts with 5'UTR | 1,816 |
Average length of transcripts with 5'UTR | 238.7 |
Total 5'UTR sequence length | 433,533 |
Intron | |
Total number of introns | 15,835 |
Average intron length | 5,304 |
Total intron sequence length | 83,999,254 |