Table 1 Gene category overlap with modules
From: Gene bionetworks that regulate ovarian primordial follicle assembly
Module | Gene category | Gene | Over |
|---|---|---|---|
number | representation fisher | ||
module | fisher P-value†| ||
overlap* | |||
Turquoise | Ribosome | 10 | 7.52E-08 |
Turquoise | cytosolic ribosome | 7 | 2.40E-06 |
Turquoise | Neural tube closure | 4 | 0.00041 |
Turquoise | Negative regulation of binding | 5 | 0.00045 |
Turquoise | Primary neural tube formation | 4 | 0.00056 |
Turquoise | Protein biosynthesis | 15 | 0.00071 |
Turquoise | Glutathione metabolism | 5 | 0.0011 |
Blue | Response to oxidative stress | 12 | 1.30E-06 |
Blue | Regulation of anatomical structure morphogenesis | 13 | 2.20E-06 |
Blue | Mesoderm development | 18 | 1.90E-05 |
Blue | Angiogenesis | 6 | 2.20E-05 |
Blue | Response to carbohydrate stimulus | 6 | 3.60E-05 |
Blue | Regulation of axonogenesis | 6 | 5.00E-05 |
Blue | Membrane raft | 9 | 7.80E-05 |
Blue | negative chemotaxis | 3 | 1.00E-04 |
Blue | Axon guidance | 6 | 3.70E-03 |
Blue | Glutathione metabolism | 3 | 3.10E-02 |
Blue | Focal adhesion | 6 | 3.20E-02 |
Blue | Fc gamma R-mediated phagocytosis | 4 | 3.60E-02 |
Blue | MAPK signaling pathway | 6 | 8.50E-02 |
Brown | Germ cell nucleus | 3 | 7.00E-04 |
Brown | Male meiosis | 3 | 0.0015 |
Brown | Neurite regeneration | 3 | 0.0031 |
Brown | Condensed nuclear chromosome | 3 | 0.0041 |
Brown | Other oncogenesis | 3 | 0.0074 |
Brown | Cell cycle | 4 | 0.026 |
Brown | Olfactory transduction | 12 | 0.065 |
Yellow | Hematopoietic cell lineage | 3 | 0.0027 |
Yellow | Positive regulation of apoptosis | 5 | 0.009 |
Yellow | Coenzyme and prosthetic group metabolism | 3 | 0.015 |
yellow | Mitochondrial lumen | 3 | 0.018 |
Green | proteinaceous extracellular matrix | 3 | 0.0072 |
Black | Extracellular matrix | 4 | 0.00015 |
Black | extracellular region | 7 | 0.00042 |
Black | Response to stress | 8 | 0.002 |
Black | Cell communication | 6 | 0.0029 |
Black | Negative regulation of apoptosis | 4 | 0.0029 |
Pink | Apical plasma membrane | 3 | 0.0011 |
Pink | Protein glycosylation | 3 | 0.0018 |
Magenta | Calcium mediated signaling | 2 | 0.0066 |